miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 41263 0.67 0.590445
Target:  5'- aGCGCaGGCCGCGGagguGCUUGGacucaguGGGuCGACa -3'
miRNA:   3'- -UGCGgCUGGUGCC----UGAGCU-------UCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 41732 0.7 0.433039
Target:  5'- gGCGuuGGCCA-GGaACUUGGAGGUGGg -3'
miRNA:   3'- -UGCggCUGGUgCC-UGAGCUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 41977 0.69 0.442262
Target:  5'- gGCGCUGACCu--GACcuacgCGggGGCGAUc -3'
miRNA:   3'- -UGCGGCUGGugcCUGa----GCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 42354 0.67 0.591487
Target:  5'- gGCGCCuuCCGCGGGCg-GGAccagcagcucGGCGGCc -3'
miRNA:   3'- -UGCGGcuGGUGCCUGagCUU----------CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 42361 0.66 0.664739
Target:  5'- -aGCCGcaaguGCCGCGca-UCGGAGGCGuACg -3'
miRNA:   3'- ugCGGC-----UGGUGCcugAGCUUCCGC-UG- -5'
18291 3' -58.5 NC_004681.1 + 42615 0.66 0.632288
Target:  5'- gAUGCCGggggcgcauuccuGCCAgcgguCGGGCUCGAAGccuuCGACa -3'
miRNA:   3'- -UGCGGC-------------UGGU-----GCCUGAGCUUCc---GCUG- -5'
18291 3' -58.5 NC_004681.1 + 44228 0.71 0.339513
Target:  5'- -gGCCaGGcCCGCGGcCUCGggGGUGAg -3'
miRNA:   3'- ugCGG-CU-GGUGCCuGAGCuuCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 44681 0.7 0.406057
Target:  5'- uGCGgCGGCCGCGaGCgCGgcGGCGAUg -3'
miRNA:   3'- -UGCgGCUGGUGCcUGaGCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 44850 0.67 0.581083
Target:  5'- -aGCCGcCCGCGagggaguccucGACgUCGAAGGCGcCg -3'
miRNA:   3'- ugCGGCuGGUGC-----------CUG-AGCUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 45074 0.66 0.619711
Target:  5'- cCGCCGcggucgaggcccucGCCGCGGuCUCGcucaagaccGGGGcCGACg -3'
miRNA:   3'- uGCGGC--------------UGGUGCCuGAGC---------UUCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 45201 0.68 0.519703
Target:  5'- gGCGUCGGCCcCGGuCUUGAGcgagaccgcGGCGAg -3'
miRNA:   3'- -UGCGGCUGGuGCCuGAGCUU---------CCGCUg -5'
18291 3' -58.5 NC_004681.1 + 46946 0.7 0.388667
Target:  5'- cCGCCGACU-CGGGCgacAAGGCGAUg -3'
miRNA:   3'- uGCGGCUGGuGCCUGagcUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 47143 0.66 0.668913
Target:  5'- cGCGCuCGugCAcauccucgucgggguCGGGCUCGucGGUGGg -3'
miRNA:   3'- -UGCG-GCugGU---------------GCCUGAGCuuCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 48809 0.71 0.371772
Target:  5'- uCGuuGACCGCGGgcgACUCGAAGcCGAa -3'
miRNA:   3'- uGCggCUGGUGCC---UGAGCUUCcGCUg -5'
18291 3' -58.5 NC_004681.1 + 50247 0.68 0.509706
Target:  5'- uUGCCGACUuggACGGAgaugccgccguCgucagCGAGGGCGAUg -3'
miRNA:   3'- uGCGGCUGG---UGCCU-----------Ga----GCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 50391 0.67 0.581083
Target:  5'- aGCGUCGGCCGCGGGgacguggcccuuCUUGcgguGGGCG-Cg -3'
miRNA:   3'- -UGCGGCUGGUGCCU------------GAGCu---UCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 51272 0.66 0.622854
Target:  5'- gGCGCCGAggaCUGCuGACUCGgcGGCu-- -3'
miRNA:   3'- -UGCGGCU---GGUGcCUGAGCuuCCGcug -5'
18291 3' -58.5 NC_004681.1 + 51588 0.66 0.640673
Target:  5'- -aGCCGAgCugGcGGCagcggucgcccaguUCGAugAGGCGACg -3'
miRNA:   3'- ugCGGCUgGugC-CUG--------------AGCU--UCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 53158 0.71 0.371772
Target:  5'- cAC-CCGGCCACGGACUuccucaUGGccGCGACa -3'
miRNA:   3'- -UGcGGCUGGUGCCUGA------GCUucCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 53835 0.69 0.461036
Target:  5'- uUGCCuucuucauggagGGCCauGCGGACUgGggGGUGGCc -3'
miRNA:   3'- uGCGG------------CUGG--UGCCUGAgCuuCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.