miRNA display CGI


Results 61 - 79 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 54490 0.67 0.595658
Target:  5'- gACGUCGACCAC---CUCGAacuccacacccagcuGGGUGGCg -3'
miRNA:   3'- -UGCGGCUGGUGccuGAGCU---------------UCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 56228 0.73 0.274544
Target:  5'- gGCGUCGACCcgaGCGaGCUgcaaGAGGGCGACa -3'
miRNA:   3'- -UGCGGCUGG---UGCcUGAg---CUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 58518 0.71 0.371772
Target:  5'- gGCGUCGGCCGCGGA---GAAGGUG-Cg -3'
miRNA:   3'- -UGCGGCUGGUGCCUgagCUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 59688 0.68 0.519703
Target:  5'- aGCGCCG-CCACGcccccuGCUgGGAGuGCGGCc -3'
miRNA:   3'- -UGCGGCuGGUGCc-----UGAgCUUC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 60555 0.66 0.622854
Target:  5'- cACGCCGcacGCCuCGGGC-CGcuGGcCGACg -3'
miRNA:   3'- -UGCGGC---UGGuGCCUGaGCuuCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 60605 0.66 0.622854
Target:  5'- cCGCCG-CUGCGGcACUUGAcgagcAGaGCGGCa -3'
miRNA:   3'- uGCGGCuGGUGCC-UGAGCU-----UC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 61154 0.7 0.409593
Target:  5'- aACGCCG-CCGCGacgcccagggcaacuGGgUCGAcGGCGACg -3'
miRNA:   3'- -UGCGGCuGGUGC---------------CUgAGCUuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 61481 0.66 0.655333
Target:  5'- cCGCCGACCuuGGACacgCGAGcuguugcccaccgcaGCGACg -3'
miRNA:   3'- uGCGGCUGGugCCUGa--GCUUc--------------CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 61853 0.74 0.248411
Target:  5'- gAUGgCGGCCGCGGucuggugGCgcgCGAGGGCGGCc -3'
miRNA:   3'- -UGCgGCUGGUGCC-------UGa--GCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 62637 0.71 0.380157
Target:  5'- gACaCCGAgguagACGGugUCGGAGGCGGCu -3'
miRNA:   3'- -UGcGGCUgg---UGCCugAGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 62700 0.68 0.55013
Target:  5'- gGCGCCGGaugagGCGGACggggUGggGGCGu- -3'
miRNA:   3'- -UGCGGCUgg---UGCCUGa---GCuuCCGCug -5'
18291 3' -58.5 NC_004681.1 + 64014 0.66 0.65324
Target:  5'- aGCGcCCGACa--GGACUCGAaccugcauaaccuGGGUGGa -3'
miRNA:   3'- -UGC-GGCUGgugCCUGAGCU-------------UCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 64343 0.67 0.557312
Target:  5'- -aGCUGGcgaagaagugaggcCCGCGGACaaggCGuGGGCGACa -3'
miRNA:   3'- ugCGGCU--------------GGUGCCUGa---GCuUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 64920 0.67 0.591487
Target:  5'- gGCGCCcGCCugGaGCaCGAGguGGCGACg -3'
miRNA:   3'- -UGCGGcUGGugCcUGaGCUU--CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 64930 0.67 0.591487
Target:  5'- gGCGCagguaccaGucCCACGGGgugccCUCGGAGGCGGg -3'
miRNA:   3'- -UGCGg-------Cu-GGUGCCU-----GAGCUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 65862 0.66 0.668913
Target:  5'- cCGCCucaaACCACuGGACgUCGAagcgaucaccguuccAGGUGACg -3'
miRNA:   3'- uGCGGc---UGGUG-CCUG-AGCU---------------UCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 66949 0.73 0.281242
Target:  5'- gUGCCGcgcGCCGa--GCUCGAAGGCGACa -3'
miRNA:   3'- uGCGGC---UGGUgccUGAGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 68234 0.66 0.622854
Target:  5'- aACGCCG-CCACGGucucaucgACUaCGccGuGCGACg -3'
miRNA:   3'- -UGCGGCuGGUGCC--------UGA-GCuuC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 69148 0.67 0.591487
Target:  5'- gGCGCa-GCCAuCGGugUCGcAGGuGCGGCc -3'
miRNA:   3'- -UGCGgcUGGU-GCCugAGC-UUC-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.