Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18291 | 3' | -58.5 | NC_004681.1 | + | 39304 | 0.67 | 0.570718 |
Target: 5'- -aGUCGACCAgGcugacguccucGACgUCGAGGGCGAg -3' miRNA: 3'- ugCGGCUGGUgC-----------CUG-AGCUUCCGCUg -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 35607 | 0.68 | 0.539921 |
Target: 5'- cGCGCCGAguacugcauCUGCGGGuggUCGGaggaAGGCGACg -3' miRNA: 3'- -UGCGGCU---------GGUGCCUg--AGCU----UCCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 33673 | 0.74 | 0.255214 |
Target: 5'- uGCGCUucGCCGCGGgagugaagcGCUCGAAGaGCGGCg -3' miRNA: 3'- -UGCGGc-UGGUGCC---------UGAGCUUC-CGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 33296 | 0.67 | 0.581083 |
Target: 5'- gACGCCGgucgcGCCGCGGugUaCGccGG-GACg -3' miRNA: 3'- -UGCGGC-----UGGUGCCugA-GCuuCCgCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 32096 | 0.68 | 0.539921 |
Target: 5'- gGCGCCGAUCAgCGaGC-CGAugcuGGCGAUg -3' miRNA: 3'- -UGCGGCUGGU-GCcUGaGCUu---CCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 31827 | 0.67 | 0.581083 |
Target: 5'- gGCGCCuGCCAcuuCGGACa-GGAGcGCGAUg -3' miRNA: 3'- -UGCGGcUGGU---GCCUGagCUUC-CGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 31725 | 0.7 | 0.386101 |
Target: 5'- gAUGCCGcACCA-GGugUCGAuuacacccucguccAGGUGACg -3' miRNA: 3'- -UGCGGC-UGGUgCCugAGCU--------------UCCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 30659 | 0.71 | 0.363515 |
Target: 5'- uGCGCCGGUa--GGACUCGguGGUGGCa -3' miRNA: 3'- -UGCGGCUGgugCCUGAGCuuCCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 30137 | 0.66 | 0.643816 |
Target: 5'- -aGgCGGCCuguggguCGGGCUC--AGGCGGCg -3' miRNA: 3'- ugCgGCUGGu------GCCUGAGcuUCCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 29634 | 0.67 | 0.570718 |
Target: 5'- gACGUCGACCACG-AC-CGAuGGCaACa -3' miRNA: 3'- -UGCGGCUGGUGCcUGaGCUuCCGcUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 29502 | 0.67 | 0.560398 |
Target: 5'- gACGCCaGACCACGcGGuggUGGAGGCG-Cu -3' miRNA: 3'- -UGCGG-CUGGUGC-CUga-GCUUCCGCuG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 28860 | 0.66 | 0.664739 |
Target: 5'- -aGCUgGGCCACGaACUCcauGGCGACa -3' miRNA: 3'- ugCGG-CUGGUGCcUGAGcuuCCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 28139 | 0.73 | 0.28807 |
Target: 5'- aACGgCGGCgGCGGA-UCGAGcGGCGGCa -3' miRNA: 3'- -UGCgGCUGgUGCCUgAGCUU-CCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 27140 | 1.08 | 0.000959 |
Target: 5'- gACGCCGACCACGGACUCGAAGGCGACc -3' miRNA: 3'- -UGCGGCUGGUGCCUGAGCUUCCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 25766 | 0.71 | 0.370941 |
Target: 5'- cCGCUGACCcCGGACaugcacuuUCGGAucggcucGGCGACg -3' miRNA: 3'- uGCGGCUGGuGCCUG--------AGCUU-------CCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 25236 | 0.67 | 0.601922 |
Target: 5'- aACGgCGGCCAUGGcGCcCGc-GGCGGCg -3' miRNA: 3'- -UGCgGCUGGUGCC-UGaGCuuCCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 25049 | 0.7 | 0.433039 |
Target: 5'- cACGgUGACCGCagaGGGCggCGcGGGCGGCa -3' miRNA: 3'- -UGCgGCUGGUG---CCUGa-GCuUCCGCUG- -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 23348 | 0.67 | 0.61238 |
Target: 5'- cACGCCaaaucuCCGCgGGACUCGggGGguUGAg -3' miRNA: 3'- -UGCGGcu----GGUG-CCUGAGCuuCC--GCUg -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 22720 | 0.7 | 0.414934 |
Target: 5'- gGCGCUGcCCGCGGugUCcguggagaaGGAGGUGGg -3' miRNA: 3'- -UGCGGCuGGUGCCugAG---------CUUCCGCUg -5' |
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18291 | 3' | -58.5 | NC_004681.1 | + | 19401 | 0.74 | 0.242958 |
Target: 5'- gGCGCUGACCGagucgaaGGACUUccaGAAGGCGuCg -3' miRNA: 3'- -UGCGGCUGGUg------CCUGAG---CUUCCGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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