miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 64920 0.67 0.591487
Target:  5'- gGCGCCcGCCugGaGCaCGAGguGGCGACg -3'
miRNA:   3'- -UGCGGcUGGugCcUGaGCUU--CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 59688 0.68 0.519703
Target:  5'- aGCGCCG-CCACGcccccuGCUgGGAGuGCGGCc -3'
miRNA:   3'- -UGCGGCuGGUGCc-----UGAgCUUC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 62700 0.68 0.55013
Target:  5'- gGCGCCGGaugagGCGGACggggUGggGGCGu- -3'
miRNA:   3'- -UGCGGCUgg---UGCCUGa---GCuuCCGCug -5'
18291 3' -58.5 NC_004681.1 + 10524 0.68 0.55013
Target:  5'- cGCGaaguCCGACCGCGGAauccCGcAGGCGGu -3'
miRNA:   3'- -UGC----GGCUGGUGCCUga--GCuUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 12999 0.68 0.55013
Target:  5'- cCGCUGgcACCGCGGACgacgUGGccGCGACu -3'
miRNA:   3'- uGCGGC--UGGUGCCUGa---GCUucCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 64343 0.67 0.557312
Target:  5'- -aGCUGGcgaagaagugaggcCCGCGGACaaggCGuGGGCGACa -3'
miRNA:   3'- ugCGGCU--------------GGUGCCUGa---GCuUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 15681 0.67 0.570718
Target:  5'- gACGUCGAgCACGc-CUCGGAGGUcaugGACa -3'
miRNA:   3'- -UGCGGCUgGUGCcuGAGCUUCCG----CUG- -5'
18291 3' -58.5 NC_004681.1 + 29634 0.67 0.570718
Target:  5'- gACGUCGACCACG-AC-CGAuGGCaACa -3'
miRNA:   3'- -UGCGGCUGGUGCcUGaGCUuCCGcUG- -5'
18291 3' -58.5 NC_004681.1 + 33296 0.67 0.581083
Target:  5'- gACGCCGgucgcGCCGCGGugUaCGccGG-GACg -3'
miRNA:   3'- -UGCGGC-----UGGUGCCugA-GCuuCCgCUG- -5'
18291 3' -58.5 NC_004681.1 + 53835 0.69 0.461036
Target:  5'- uUGCCuucuucauggagGGCCauGCGGACUgGggGGUGGCc -3'
miRNA:   3'- uGCGG------------CUGG--UGCCUGAgCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 41977 0.69 0.442262
Target:  5'- gGCGCUGACCu--GACcuacgCGggGGCGAUc -3'
miRNA:   3'- -UGCGGCUGGugcCUGa----GCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 25049 0.7 0.433039
Target:  5'- cACGgUGACCGCagaGGGCggCGcGGGCGGCa -3'
miRNA:   3'- -UGCgGCUGGUG---CCUGa-GCuUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 66949 0.73 0.281242
Target:  5'- gUGCCGcgcGCCGa--GCUCGAAGGCGACa -3'
miRNA:   3'- uGCGGC---UGGUgccUGAGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 28139 0.73 0.28807
Target:  5'- aACGgCGGCgGCGGA-UCGAGcGGCGGCa -3'
miRNA:   3'- -UGCgGCUGgUGCCUgAGCUU-CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 14440 0.71 0.355385
Target:  5'- uACGCCGcCCGCGagg-CGGAGGCGAa -3'
miRNA:   3'- -UGCGGCuGGUGCcugaGCUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 25766 0.71 0.370941
Target:  5'- cCGCUGACCcCGGACaugcacuuUCGGAucggcucGGCGACg -3'
miRNA:   3'- uGCGGCUGGuGCCUG--------AGCUU-------CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 53158 0.71 0.371772
Target:  5'- cAC-CCGGCCACGGACUuccucaUGGccGCGACa -3'
miRNA:   3'- -UGcGGCUGGUGCCUGA------GCUucCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 6500 0.71 0.380157
Target:  5'- uCGCU--CCACGGACUCGggGaagaccgagccGCGGCg -3'
miRNA:   3'- uGCGGcuGGUGCCUGAGCuuC-----------CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 46946 0.7 0.388667
Target:  5'- cCGCCGACU-CGGGCgacAAGGCGAUg -3'
miRNA:   3'- uGCGGCUGGuGCCUGagcUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 61154 0.7 0.409593
Target:  5'- aACGCCG-CCGCGacgcccagggcaacuGGgUCGAcGGCGACg -3'
miRNA:   3'- -UGCGGCuGGUGC---------------CUgAGCUuCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.