miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 25766 0.71 0.370941
Target:  5'- cCGCUGACCcCGGACaugcacuuUCGGAucggcucGGCGACg -3'
miRNA:   3'- uGCGGCUGGuGCCUG--------AGCUU-------CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 53158 0.71 0.371772
Target:  5'- cAC-CCGGCCACGGACUuccucaUGGccGCGACa -3'
miRNA:   3'- -UGcGGCUGGUGCCUGA------GCUucCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 6500 0.71 0.380157
Target:  5'- uCGCU--CCACGGACUCGggGaagaccgagccGCGGCg -3'
miRNA:   3'- uGCGGcuGGUGCCUGAGCuuC-----------CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 46946 0.7 0.388667
Target:  5'- cCGCCGACU-CGGGCgacAAGGCGAUg -3'
miRNA:   3'- uGCGGCUGGuGCCUGagcUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 62700 0.68 0.55013
Target:  5'- gGCGCCGGaugagGCGGACggggUGggGGCGu- -3'
miRNA:   3'- -UGCGGCUgg---UGCCUGa---GCuuCCGCug -5'
18291 3' -58.5 NC_004681.1 + 59688 0.68 0.519703
Target:  5'- aGCGCCG-CCACGcccccuGCUgGGAGuGCGGCc -3'
miRNA:   3'- -UGCGGCuGGUGCc-----UGAgCUUC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 53835 0.69 0.461036
Target:  5'- uUGCCuucuucauggagGGCCauGCGGACUgGggGGUGGCc -3'
miRNA:   3'- uGCGG------------CUGG--UGCCUGAgCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 41977 0.69 0.442262
Target:  5'- gGCGCUGACCu--GACcuacgCGggGGCGAUc -3'
miRNA:   3'- -UGCGGCUGGugcCUGa----GCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 25049 0.7 0.433039
Target:  5'- cACGgUGACCGCagaGGGCggCGcGGGCGGCa -3'
miRNA:   3'- -UGCgGCUGGUG---CCUGa-GCuUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 61154 0.7 0.409593
Target:  5'- aACGCCG-CCGCGacgcccagggcaacuGGgUCGAcGGCGACg -3'
miRNA:   3'- -UGCGGCuGGUGC---------------CUgAGCUuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 48809 0.71 0.371772
Target:  5'- uCGuuGACCGCGGgcgACUCGAAGcCGAa -3'
miRNA:   3'- uGCggCUGGUGCC---UGAGCUUCcGCUg -5'
18291 3' -58.5 NC_004681.1 + 30659 0.71 0.363515
Target:  5'- uGCGCCGGUa--GGACUCGguGGUGGCa -3'
miRNA:   3'- -UGCGGCUGgugCCUGAGCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 44228 0.71 0.339513
Target:  5'- -gGCCaGGcCCGCGGcCUCGggGGUGAg -3'
miRNA:   3'- ugCGG-CU-GGUGCCuGAGCuuCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 17687 0.72 0.295028
Target:  5'- cCGCCGAuaCCACGGcGCUUGGccGCGGCg -3'
miRNA:   3'- uGCGGCU--GGUGCC-UGAGCUucCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 33673 0.74 0.255214
Target:  5'- uGCGCUucGCCGCGGgagugaagcGCUCGAAGaGCGGCg -3'
miRNA:   3'- -UGCGGc-UGGUGCC---------UGAGCUUC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 61853 0.74 0.248411
Target:  5'- gAUGgCGGCCGCGGucuggugGCgcgCGAGGGCGGCc -3'
miRNA:   3'- -UGCgGCUGGUGCC-------UGa--GCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 19401 0.74 0.242958
Target:  5'- gGCGCUGACCGagucgaaGGACUUccaGAAGGCGuCg -3'
miRNA:   3'- -UGCGGCUGGUg------CCUGAG---CUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 10763 0.75 0.193761
Target:  5'- cACGCgaCGGCCGCGGGCacCGggGGCGcCa -3'
miRNA:   3'- -UGCG--GCUGGUGCCUGa-GCuuCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 730 0.76 0.170371
Target:  5'- gGCGUCGAUCAcCGGGC-CGAAGGCG-Cg -3'
miRNA:   3'- -UGCGGCUGGU-GCCUGaGCUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 14589 0.65 0.670998
Target:  5'- aGCaCCGGCCACcaGCgcgcccugcucggCGGAGGCGGCg -3'
miRNA:   3'- -UGcGGCUGGUGccUGa------------GCUUCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.