miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 27140 1.08 0.000959
Target:  5'- gACGCCGACCACGGACUCGAAGGCGACc -3'
miRNA:   3'- -UGCGGCUGGUGCCUGAGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 2412 0.69 0.470579
Target:  5'- gGCGCCGACCuCGGuGCauucgaugucaUCGAGGGUGu- -3'
miRNA:   3'- -UGCGGCUGGuGCC-UG-----------AGCUUCCGCug -5'
18291 3' -58.5 NC_004681.1 + 8006 0.69 0.48996
Target:  5'- --uCCGGCUccucgGCGGcuucCUCGGAGGCGGCg -3'
miRNA:   3'- ugcGGCUGG-----UGCCu---GAGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 14589 0.65 0.670998
Target:  5'- aGCaCCGGCCACcaGCgcgcccugcucggCGGAGGCGGCg -3'
miRNA:   3'- -UGcGGCUGGUGccUGa------------GCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 61853 0.74 0.248411
Target:  5'- gAUGgCGGCCGCGGucuggugGCgcgCGAGGGCGGCc -3'
miRNA:   3'- -UGCgGCUGGUGCC-------UGa--GCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 33673 0.74 0.255214
Target:  5'- uGCGCUucGCCGCGGgagugaagcGCUCGAAGaGCGGCg -3'
miRNA:   3'- -UGCGGc-UGGUGCC---------UGAGCUUC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 44228 0.71 0.339513
Target:  5'- -gGCCaGGcCCGCGGcCUCGggGGUGAg -3'
miRNA:   3'- ugCGG-CU-GGUGCCuGAGCuuCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 30659 0.71 0.363515
Target:  5'- uGCGCCGGUa--GGACUCGguGGUGGCa -3'
miRNA:   3'- -UGCGGCUGgugCCUGAGCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 40053 0.71 0.377628
Target:  5'- gGCGCCGACgcgCGCGGA-UCGAcuugucguugaggcGGGCGAa -3'
miRNA:   3'- -UGCGGCUG---GUGCCUgAGCU--------------UCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 41732 0.7 0.433039
Target:  5'- gGCGuuGGCCA-GGaACUUGGAGGUGGg -3'
miRNA:   3'- -UGCggCUGGUgCC-UGAGCUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 31725 0.7 0.386101
Target:  5'- gAUGCCGcACCA-GGugUCGAuuacacccucguccAGGUGACg -3'
miRNA:   3'- -UGCGGC-UGGUgCCugAGCU--------------UCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 58518 0.71 0.371772
Target:  5'- gGCGUCGGCCGCGGA---GAAGGUG-Cg -3'
miRNA:   3'- -UGCGGCUGGUGCCUgagCUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 730 0.76 0.170371
Target:  5'- gGCGUCGAUCAcCGGGC-CGAAGGCG-Cg -3'
miRNA:   3'- -UGCGGCUGGU-GCCUGaGCUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 44681 0.7 0.406057
Target:  5'- uGCGgCGGCCGCGaGCgCGgcGGCGAUg -3'
miRNA:   3'- -UGCgGCUGGUGCcUGaGCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 10763 0.75 0.193761
Target:  5'- cACGCgaCGGCCGCGGGCacCGggGGCGcCa -3'
miRNA:   3'- -UGCG--GCUGGUGCCUGa-GCuuCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 48809 0.71 0.371772
Target:  5'- uCGuuGACCGCGGgcgACUCGAAGcCGAa -3'
miRNA:   3'- uGCggCUGGUGCC---UGAGCUUCcGCUg -5'
18291 3' -58.5 NC_004681.1 + 22720 0.7 0.414934
Target:  5'- gGCGCUGcCCGCGGugUCcguggagaaGGAGGUGGg -3'
miRNA:   3'- -UGCGGCuGGUGCCugAG---------CUUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 13676 0.69 0.480222
Target:  5'- -gGCCGcCCGCGGcCUUGAAGcGCG-Cg -3'
miRNA:   3'- ugCGGCuGGUGCCuGAGCUUC-CGCuG- -5'
18291 3' -58.5 NC_004681.1 + 19401 0.74 0.242958
Target:  5'- gGCGCUGACCGagucgaaGGACUUccaGAAGGCGuCg -3'
miRNA:   3'- -UGCGGCUGGUg------CCUGAG---CUUCCGCuG- -5'
18291 3' -58.5 NC_004681.1 + 17687 0.72 0.295028
Target:  5'- cCGCCGAuaCCACGGcGCUUGGccGCGGCg -3'
miRNA:   3'- uGCGGCU--GGUGCC-UGAGCUucCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.