miRNA display CGI


Results 61 - 79 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 3' -58.5 NC_004681.1 + 28139 0.73 0.28807
Target:  5'- aACGgCGGCgGCGGA-UCGAGcGGCGGCa -3'
miRNA:   3'- -UGCgGCUGgUGCCUgAGCUU-CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 66949 0.73 0.281242
Target:  5'- gUGCCGcgcGCCGa--GCUCGAAGGCGACa -3'
miRNA:   3'- uGCGGC---UGGUgccUGAGCUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 10524 0.68 0.55013
Target:  5'- cGCGaaguCCGACCGCGGAauccCGcAGGCGGu -3'
miRNA:   3'- -UGC----GGCUGGUGCCUga--GCuUCCGCUg -5'
18291 3' -58.5 NC_004681.1 + 12999 0.68 0.55013
Target:  5'- cCGCUGgcACCGCGGACgacgUGGccGCGACu -3'
miRNA:   3'- uGCGGC--UGGUGCCUGa---GCUucCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 42361 0.66 0.664739
Target:  5'- -aGCCGcaaguGCCGCGca-UCGGAGGCGuACg -3'
miRNA:   3'- ugCGGC-----UGGUGCcugAGCUUCCGC-UG- -5'
18291 3' -58.5 NC_004681.1 + 6890 0.66 0.6501
Target:  5'- gACGUCGACCACGGcauguccguggccACcaccgugggcucguUCcaccccuacuuuGAGGGCGACa -3'
miRNA:   3'- -UGCGGCUGGUGCC-------------UG--------------AG------------CUUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 30137 0.66 0.643816
Target:  5'- -aGgCGGCCuguggguCGGGCUC--AGGCGGCg -3'
miRNA:   3'- ugCgGCUGGu------GCCUGAGcuUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 60605 0.66 0.622854
Target:  5'- cCGCCG-CUGCGGcACUUGAcgagcAGaGCGGCa -3'
miRNA:   3'- uGCGGCuGGUGCC-UGAGCU-----UC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 68234 0.66 0.622854
Target:  5'- aACGCCG-CCACGGucucaucgACUaCGccGuGCGACg -3'
miRNA:   3'- -UGCGGCuGGUGCC--------UGA-GCuuC-CGCUG- -5'
18291 3' -58.5 NC_004681.1 + 60555 0.66 0.622854
Target:  5'- cACGCCGcacGCCuCGGGC-CGcuGGcCGACg -3'
miRNA:   3'- -UGCGGC---UGGuGCCUGaGCuuCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 45074 0.66 0.619711
Target:  5'- cCGCCGcggucgaggcccucGCCGCGGuCUCGcucaagaccGGGGcCGACg -3'
miRNA:   3'- uGCGGC--------------UGGUGCCuGAGC---------UUCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 25236 0.67 0.601922
Target:  5'- aACGgCGGCCAUGGcGCcCGc-GGCGGCg -3'
miRNA:   3'- -UGCgGCUGGUGCC-UGaGCuuCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 6303 0.67 0.600877
Target:  5'- -gGCCuGCCGCGGucggaugACcCGAAGGcCGACg -3'
miRNA:   3'- ugCGGcUGGUGCC-------UGaGCUUCC-GCUG- -5'
18291 3' -58.5 NC_004681.1 + 64920 0.67 0.591487
Target:  5'- gGCGCCcGCCugGaGCaCGAGguGGCGACg -3'
miRNA:   3'- -UGCGGcUGGugCcUGaGCUU--CCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 33296 0.67 0.581083
Target:  5'- gACGCCGgucgcGCCGCGGugUaCGccGG-GACg -3'
miRNA:   3'- -UGCGGC-----UGGUGCCugA-GCuuCCgCUG- -5'
18291 3' -58.5 NC_004681.1 + 29634 0.67 0.570718
Target:  5'- gACGUCGACCACG-AC-CGAuGGCaACa -3'
miRNA:   3'- -UGCGGCUGGUGCcUGaGCUuCCGcUG- -5'
18291 3' -58.5 NC_004681.1 + 15681 0.67 0.570718
Target:  5'- gACGUCGAgCACGc-CUCGGAGGUcaugGACa -3'
miRNA:   3'- -UGCGGCUgGUGCcuGAGCUUCCG----CUG- -5'
18291 3' -58.5 NC_004681.1 + 64343 0.67 0.557312
Target:  5'- -aGCUGGcgaagaagugaggcCCGCGGACaaggCGuGGGCGACa -3'
miRNA:   3'- ugCGGCU--------------GGUGCCUGa---GCuUCCGCUG- -5'
18291 3' -58.5 NC_004681.1 + 56228 0.73 0.274544
Target:  5'- gGCGUCGACCcgaGCGaGCUgcaaGAGGGCGACa -3'
miRNA:   3'- -UGCGGCUGG---UGCcUGAg---CUUCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.