miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18291 5' -57.9 NC_004681.1 + 11589 0.66 0.646893
Target:  5'- cUGUGUCGUcgCCGUAGUCaa-GCCAGAa -3'
miRNA:   3'- cACACGGUA--GGCAUCGGcgaCGGUCU- -5'
18291 5' -57.9 NC_004681.1 + 36820 0.66 0.646893
Target:  5'- uUGUcGCCGcgggCCGUGGCUGCUuCgCAGAa -3'
miRNA:   3'- cACA-CGGUa---GGCAUCGGCGAcG-GUCU- -5'
18291 5' -57.9 NC_004681.1 + 34008 0.66 0.646893
Target:  5'- gGUGUGCCcgucgUCGUGGUCGaCUG-CGGAg -3'
miRNA:   3'- -CACACGGua---GGCAUCGGC-GACgGUCU- -5'
18291 5' -57.9 NC_004681.1 + 60154 0.66 0.646893
Target:  5'- aUG-GCCA-CgGUcAGCCGgUGCCAGGu -3'
miRNA:   3'- cACaCGGUaGgCA-UCGGCgACGGUCU- -5'
18291 5' -57.9 NC_004681.1 + 2128 0.66 0.640464
Target:  5'- -gGUGCgG-CCGcccuccacgaccaccUGGCCGCgGCCGGAu -3'
miRNA:   3'- caCACGgUaGGC---------------AUCGGCGaCGGUCU- -5'
18291 5' -57.9 NC_004681.1 + 47463 0.66 0.636177
Target:  5'- -aGUGCCAUCagGUcGCCGCgugcgacgGCCAc- -3'
miRNA:   3'- caCACGGUAGg-CAuCGGCGa-------CGGUcu -5'
18291 5' -57.9 NC_004681.1 + 21450 0.66 0.614743
Target:  5'- -cGUGCCGguaggacCCGUGacGCCGCUGCg--- -3'
miRNA:   3'- caCACGGUa------GGCAU--CGGCGACGgucu -5'
18291 5' -57.9 NC_004681.1 + 18208 0.66 0.604043
Target:  5'- -gGUGCCuggCCGggggcGCCGaUGCCGGGg -3'
miRNA:   3'- caCACGGua-GGCau---CGGCgACGGUCU- -5'
18291 5' -57.9 NC_004681.1 + 20369 0.67 0.593366
Target:  5'- -cGUGCCaAUCCc--GCCGaaGCCGGAa -3'
miRNA:   3'- caCACGG-UAGGcauCGGCgaCGGUCU- -5'
18291 5' -57.9 NC_004681.1 + 17596 0.67 0.561554
Target:  5'- ---aGCCAacccggaagucUCCGaGGCCGCccaUGCCAGGc -3'
miRNA:   3'- cacaCGGU-----------AGGCaUCGGCG---ACGGUCU- -5'
18291 5' -57.9 NC_004681.1 + 20156 0.67 0.551048
Target:  5'- -gGUGCCggGUCCGUAGCagagguaGCgcgGCCAc- -3'
miRNA:   3'- caCACGG--UAGGCAUCGg------CGa--CGGUcu -5'
18291 5' -57.9 NC_004681.1 + 44786 0.67 0.551048
Target:  5'- cGUGacGCCG-CCGUcGCCGUUGCCGu- -3'
miRNA:   3'- -CACa-CGGUaGGCAuCGGCGACGGUcu -5'
18291 5' -57.9 NC_004681.1 + 634 0.69 0.44078
Target:  5'- uUGUGCCcgUCGUugagggacucgcGGCCGCggaagaugGCCGGGu -3'
miRNA:   3'- cACACGGuaGGCA------------UCGGCGa-------CGGUCU- -5'
18291 5' -57.9 NC_004681.1 + 27104 1.08 0.00085
Target:  5'- gGUGUGCCAUCCGUAGCCGCUGCCAGAc -3'
miRNA:   3'- -CACACGGUAGGCAUCGGCGACGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.