miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18292 3' -55.6 NC_004681.1 + 6662 0.66 0.780638
Target:  5'- cCUGG-AGGACaucUUGCuCGCCGUgcagcucgcacugGCCg -3'
miRNA:   3'- -GACCaUCCUGau-GACG-GCGGCAa------------CGG- -5'
18292 3' -55.6 NC_004681.1 + 54982 0.66 0.774777
Target:  5'- cCUGGUAguGGGCaGCuUGuuGCCGcgGUCg -3'
miRNA:   3'- -GACCAU--CCUGaUG-ACggCGGCaaCGG- -5'
18292 3' -55.6 NC_004681.1 + 51485 0.66 0.774777
Target:  5'- aCUGGgc-GACcGCUGCCGCCagcucgGCUa -3'
miRNA:   3'- -GACCaucCUGaUGACGGCGGcaa---CGG- -5'
18292 3' -55.6 NC_004681.1 + 53358 0.66 0.774777
Target:  5'- -cGGgAGGGCUAUacccuugGCCGCCuGgugcaggUGCCa -3'
miRNA:   3'- gaCCaUCCUGAUGa------CGGCGG-Ca------ACGG- -5'
18292 3' -55.6 NC_004681.1 + 74786 0.66 0.774777
Target:  5'- ----gAGGuCUACaGCgGCCGUUGCUu -3'
miRNA:   3'- gaccaUCCuGAUGaCGgCGGCAACGG- -5'
18292 3' -55.6 NC_004681.1 + 46754 0.67 0.744758
Target:  5'- gUGGUGGGACcggcGCUGCgCGCgcaCGgcGUCa -3'
miRNA:   3'- gACCAUCCUGa---UGACG-GCG---GCaaCGG- -5'
18292 3' -55.6 NC_004681.1 + 63073 0.67 0.744758
Target:  5'- aUGGacGGaaaGCUGCUcgcGCCGCCGccGCCa -3'
miRNA:   3'- gACCauCC---UGAUGA---CGGCGGCaaCGG- -5'
18292 3' -55.6 NC_004681.1 + 61508 0.67 0.73452
Target:  5'- ----gAGGA--GCUGCCGCCcccguugcuGUUGCCg -3'
miRNA:   3'- gaccaUCCUgaUGACGGCGG---------CAACGG- -5'
18292 3' -55.6 NC_004681.1 + 70462 0.67 0.73452
Target:  5'- aUGGUGGucCUGCgGCCGCgCGUagacgucaGCCg -3'
miRNA:   3'- gACCAUCcuGAUGaCGGCG-GCAa-------CGG- -5'
18292 3' -55.6 NC_004681.1 + 24960 0.67 0.724183
Target:  5'- gCUGGUgaGGGAgcCUugGCgGCCGCCGcccgcGCCg -3'
miRNA:   3'- -GACCA--UCCU--GA--UGaCGGCGGCaa---CGG- -5'
18292 3' -55.6 NC_004681.1 + 6531 0.67 0.712713
Target:  5'- aCUGGUccagagacgcgacAGGAgUGCUgGCCggucgcuucggcGCCGggGCCu -3'
miRNA:   3'- -GACCA-------------UCCUgAUGA-CGG------------CGGCaaCGG- -5'
18292 3' -55.6 NC_004681.1 + 2542 0.67 0.70326
Target:  5'- gUGGgcGGACga-UGUCGUCGcgcUGCCa -3'
miRNA:   3'- gACCauCCUGaugACGGCGGCa--ACGG- -5'
18292 3' -55.6 NC_004681.1 + 18379 0.68 0.682071
Target:  5'- ----gAGGACUGCggccgUGCCGCgcccggaGUUGCCg -3'
miRNA:   3'- gaccaUCCUGAUG-----ACGGCGg------CAACGG- -5'
18292 3' -55.6 NC_004681.1 + 31433 0.68 0.671403
Target:  5'- -gGGUAGGACggAUUGgaGCCGUagGCUg -3'
miRNA:   3'- gaCCAUCCUGa-UGACggCGGCAa-CGG- -5'
18292 3' -55.6 NC_004681.1 + 21445 0.69 0.606996
Target:  5'- -cGGUAGGACccgugAC-GCCGCUGcgGUCg -3'
miRNA:   3'- gaCCAUCCUGa----UGaCGGCGGCaaCGG- -5'
18292 3' -55.6 NC_004681.1 + 28250 0.69 0.600564
Target:  5'- -cGGUGccGCUgccgccgcucgauccGCcGCCGCCGUUGCCc -3'
miRNA:   3'- gaCCAUccUGA---------------UGaCGGCGGCAACGG- -5'
18292 3' -55.6 NC_004681.1 + 9444 0.7 0.546443
Target:  5'- gUGGUgacaaccGGGACgccccagauguucUUGCCGCCGUUGaCCg -3'
miRNA:   3'- gACCA-------UCCUGau-----------GACGGCGGCAAC-GG- -5'
18292 3' -55.6 NC_004681.1 + 26321 0.71 0.502058
Target:  5'- -gGGgcGGGC-AUcGCCGCCGUggcggGCCa -3'
miRNA:   3'- gaCCauCCUGaUGaCGGCGGCAa----CGG- -5'
18292 3' -55.6 NC_004681.1 + 49277 0.72 0.423225
Target:  5'- uUGGUgagcuccAGGAUUucccuguacucGCUGUCGCCGcUGCCa -3'
miRNA:   3'- gACCA-------UCCUGA-----------UGACGGCGGCaACGG- -5'
18292 3' -55.6 NC_004681.1 + 44809 0.72 0.414011
Target:  5'- gUGGUGGuGACgcGCUuggugcgcgugacGCCGCCGUcGCCg -3'
miRNA:   3'- gACCAUC-CUGa-UGA-------------CGGCGGCAaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.