miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18292 5' -55.9 NC_004681.1 + 6886 0.66 0.767867
Target:  5'- -uGAGAGCAc---CGCGGUGAagcCGCCAu -3'
miRNA:   3'- guCUCUCGUcacuGCGUCACU---GCGGU- -5'
18292 5' -55.9 NC_004681.1 + 51610 0.66 0.767867
Target:  5'- uCGGAG-GUGGUGGCGuCGGUGuaGCCGa -3'
miRNA:   3'- -GUCUCuCGUCACUGC-GUCACugCGGU- -5'
18292 5' -55.9 NC_004681.1 + 59452 0.66 0.757823
Target:  5'- gCAGAGGGUGG-GGC-CAGUGAcuagggcucCGCCGu -3'
miRNA:   3'- -GUCUCUCGUCaCUGcGUCACU---------GCGGU- -5'
18292 5' -55.9 NC_004681.1 + 17630 0.66 0.737373
Target:  5'- cCAGGGAGC-GUGGCcuGCAuGUGGCuGCUg -3'
miRNA:   3'- -GUCUCUCGuCACUG--CGU-CACUG-CGGu -5'
18292 5' -55.9 NC_004681.1 + 10314 0.66 0.716513
Target:  5'- cCGGGGAGcCAG-GGCcaGGUGugGCCGg -3'
miRNA:   3'- -GUCUCUC-GUCaCUGcgUCACugCGGU- -5'
18292 5' -55.9 NC_004681.1 + 17572 0.67 0.705956
Target:  5'- --uGGGGCAGUGACGCcgcGGccaaGCGCCGu -3'
miRNA:   3'- gucUCUCGUCACUGCG---UCac--UGCGGU- -5'
18292 5' -55.9 NC_004681.1 + 57739 0.67 0.705956
Target:  5'- gCAGAG-GCAGUGAagaaGGUGuuCGCCGa -3'
miRNA:   3'- -GUCUCuCGUCACUgcg-UCACu-GCGGU- -5'
18292 5' -55.9 NC_004681.1 + 3729 0.67 0.705956
Target:  5'- -cGAGGGCGGccugcuucuUGuCGCGGgcGACGCCGu -3'
miRNA:   3'- guCUCUCGUC---------ACuGCGUCa-CUGCGGU- -5'
18292 5' -55.9 NC_004681.1 + 62516 0.67 0.69533
Target:  5'- gAGAGGGCGGUGucgGCGCccAGccAUGCCAg -3'
miRNA:   3'- gUCUCUCGUCAC---UGCG--UCacUGCGGU- -5'
18292 5' -55.9 NC_004681.1 + 49974 0.67 0.684645
Target:  5'- uGGuAGAGCAGUGGCGUuucugcggGGUucUGCCAg -3'
miRNA:   3'- gUC-UCUCGUCACUGCG--------UCAcuGCGGU- -5'
18292 5' -55.9 NC_004681.1 + 9051 0.67 0.681429
Target:  5'- aGGAG-GCGGUGAagccggucgaacgcUGCAGcaggccguUGACGCCGg -3'
miRNA:   3'- gUCUCuCGUCACU--------------GCGUC--------ACUGCGGU- -5'
18292 5' -55.9 NC_004681.1 + 8280 0.67 0.67391
Target:  5'- --aAGAGCcucGGUGGCGCg--GACGCCGc -3'
miRNA:   3'- gucUCUCG---UCACUGCGucaCUGCGGU- -5'
18292 5' -55.9 NC_004681.1 + 27676 0.69 0.566071
Target:  5'- aCGGcGGcGGCGGUgGugGUGGUGGCGCCu -3'
miRNA:   3'- -GUC-UC-UCGUCA-CugCGUCACUGCGGu -5'
18292 5' -55.9 NC_004681.1 + 67655 0.69 0.565005
Target:  5'- uGGAGGGCugcucucGGgGAUGUAGUGACGCaCGa -3'
miRNA:   3'- gUCUCUCG-------UCaCUGCGUCACUGCG-GU- -5'
18292 5' -55.9 NC_004681.1 + 59517 0.69 0.555436
Target:  5'- uGGAGGGCGGUGAUGaGGUGGgGUa- -3'
miRNA:   3'- gUCUCUCGUCACUGCgUCACUgCGgu -5'
18292 5' -55.9 NC_004681.1 + 16143 0.69 0.544859
Target:  5'- gCGGcGGAuGCGGUGACaGCGGcGGCGCCc -3'
miRNA:   3'- -GUC-UCU-CGUCACUG-CGUCaCUGCGGu -5'
18292 5' -55.9 NC_004681.1 + 39364 0.7 0.522872
Target:  5'- uCGGGGAGUAcuUGACGCGGcggcccuUGGCGCCc -3'
miRNA:   3'- -GUCUCUCGUc-ACUGCGUC-------ACUGCGGu -5'
18292 5' -55.9 NC_004681.1 + 44813 0.74 0.299232
Target:  5'- gCAGGuGGUGGUGACGCGcuuggugcgcGUGACGCCGc -3'
miRNA:   3'- -GUCUcUCGUCACUGCGU----------CACUGCGGU- -5'
18292 5' -55.9 NC_004681.1 + 2783 0.77 0.209821
Target:  5'- aCGGAGaAGCAGUcGCGcCAGUGACGCUc -3'
miRNA:   3'- -GUCUC-UCGUCAcUGC-GUCACUGCGGu -5'
18292 5' -55.9 NC_004681.1 + 28062 1.08 0.001249
Target:  5'- cCAGAGAGCAGUGACGCAGUGACGCCAg -3'
miRNA:   3'- -GUCUCUCGUCACUGCGUCACUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.