Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18293 | 3' | -56.3 | NC_004681.1 | + | 22498 | 0.66 | 0.714209 |
Target: 5'- -gCCGUccGCGGCCGGgGUGAccaGCGUCc -3' miRNA: 3'- agGGUA--CGCUGGUCgCGCUug-UGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 2750 | 0.66 | 0.734874 |
Target: 5'- aCCUGUGggccgucaaCGACCgccucaAGgGUGAGCGCGUCa -3' miRNA: 3'- aGGGUAC---------GCUGG------UCgCGCUUGUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 32139 | 0.66 | 0.714209 |
Target: 5'- gCCCAcGCcaacGACCAGC-UGGAcCGCGUCa -3' miRNA: 3'- aGGGUaCG----CUGGUCGcGCUU-GUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 5622 | 0.66 | 0.765113 |
Target: 5'- cUUCCAggccgGUG-CCGGUGUGGGCACG-Ca -3' miRNA: 3'- -AGGGUa----CGCuGGUCGCGCUUGUGCaG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 18668 | 0.66 | 0.734874 |
Target: 5'- aCCCAUgGCGACCuuGC-CGAACcACGa- -3' miRNA: 3'- aGGGUA-CGCUGGu-CGcGCUUG-UGCag -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 4192 | 0.66 | 0.745065 |
Target: 5'- cUCCCAcgagaggaaGCGAcCCAGCGCGGGguugGCGUg -3' miRNA: 3'- -AGGGUa--------CGCU-GGUCGCGCUUg---UGCAg -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 24896 | 0.66 | 0.752135 |
Target: 5'- gCCCAUGCGGgCaugggaauuuccguGGCGCcagcGAGCGCGa- -3' miRNA: 3'- aGGGUACGCUgG--------------UCGCG----CUUGUGCag -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 32628 | 0.66 | 0.769063 |
Target: 5'- -gCCA-GCGGCCaccaggaacucacccAGCGCGAucaGgACGUCg -3' miRNA: 3'- agGGUaCGCUGG---------------UCGCGCU---UgUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 41768 | 0.67 | 0.682663 |
Target: 5'- gCCgAUGcCGACC-GCGCuGAACAUGgUCa -3' miRNA: 3'- aGGgUAC-GCUGGuCGCG-CUUGUGC-AG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 16789 | 0.67 | 0.703756 |
Target: 5'- aCCCggGaacaGGCCGGUGCucgGAGCGcCGUCg -3' miRNA: 3'- aGGGuaCg---CUGGUCGCG---CUUGU-GCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 26398 | 0.67 | 0.661388 |
Target: 5'- aCCCG-GCG--CAGUGCGGcCACGUCg -3' miRNA: 3'- aGGGUaCGCugGUCGCGCUuGUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 57377 | 0.67 | 0.703756 |
Target: 5'- uUCCCAUGgGuCgAGCGCagGAACAUcUCa -3' miRNA: 3'- -AGGGUACgCuGgUCGCG--CUUGUGcAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 31540 | 0.67 | 0.693238 |
Target: 5'- gUCCCGcaaGAUCAGUGgGAcCGCGUCu -3' miRNA: 3'- -AGGGUacgCUGGUCGCgCUuGUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 57582 | 0.67 | 0.672043 |
Target: 5'- gUCUCAgGUGGCCAGCcuGgGAAC-CGUCc -3' miRNA: 3'- -AGGGUaCGCUGGUCG--CgCUUGuGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 60648 | 0.68 | 0.607912 |
Target: 5'- gCCCGagGCGugCGGCGUGAcuacccuucgGCcCGUCu -3' miRNA: 3'- aGGGUa-CGCugGUCGCGCU----------UGuGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 33402 | 0.68 | 0.601506 |
Target: 5'- gUCCCGgcguacaccgcggcGCGACCGGCGuCGAugACa-- -3' miRNA: 3'- -AGGGUa-------------CGCUGGUCGC-GCUugUGcag -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 3875 | 0.68 | 0.596175 |
Target: 5'- gCCCAgUGCaGACuucgcguCAGCgGCGAugACGUCg -3' miRNA: 3'- aGGGU-ACG-CUG-------GUCG-CGCUugUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 17978 | 0.68 | 0.607912 |
Target: 5'- gCCCAUGCGGCCAcuccCGCuGAuCACG-Ca -3' miRNA: 3'- aGGGUACGCUGGUc---GCG-CUuGUGCaG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 45585 | 0.68 | 0.650706 |
Target: 5'- gCCCGcaagGUGGCCGGUGCcuccucCGCGUCg -3' miRNA: 3'- aGGGUa---CGCUGGUCGCGcuu---GUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 69001 | 0.68 | 0.650706 |
Target: 5'- -gCCGUGaCGAuggUCAGCGCcucGAugGCGUCg -3' miRNA: 3'- agGGUAC-GCU---GGUCGCG---CUugUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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