Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18293 | 3' | -56.3 | NC_004681.1 | + | 28795 | 1.11 | 0.000919 |
Target: 5'- gUCCCAUGCGACCAGCGCGAACACGUCa -3' miRNA: 3'- -AGGGUACGCUGGUCGCGCUUGUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 7970 | 0.73 | 0.331444 |
Target: 5'- gUCUCAU-CGACgGGCGCGGGCucuuCGUCa -3' miRNA: 3'- -AGGGUAcGCUGgUCGCGCUUGu---GCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 57896 | 0.71 | 0.473433 |
Target: 5'- aCCUcgGCGGCgCGGCGCGugguCGCGgUCu -3' miRNA: 3'- aGGGuaCGCUG-GUCGCGCuu--GUGC-AG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 13672 | 0.7 | 0.513514 |
Target: 5'- gCCC--GCGGCCuugaAGCGCGcgUACGUCu -3' miRNA: 3'- aGGGuaCGCUGG----UCGCGCuuGUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 70468 | 0.7 | 0.493287 |
Target: 5'- gUCC-UGCGGCC-GCGCGuAgACGUCa -3' miRNA: 3'- aGGGuACGCUGGuCGCGCuUgUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 16442 | 0.69 | 0.565428 |
Target: 5'- aCCCAUgGUGGucUCGGCGUGGugGCGUUc -3' miRNA: 3'- aGGGUA-CGCU--GGUCGCGCUugUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 53450 | 0.69 | 0.586598 |
Target: 5'- aCCCAcucgucUGgGGCCAuGCGUGAGCGCa-- -3' miRNA: 3'- aGGGU------ACgCUGGU-CGCGCUUGUGcag -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 41904 | 0.69 | 0.554916 |
Target: 5'- cCCCGggagGCGGCgucuuccacugCGGCGCGAAgGcCGUCg -3' miRNA: 3'- aGGGUa---CGCUG-----------GUCGCGCUUgU-GCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 6785 | 0.69 | 0.534073 |
Target: 5'- cUUCCGcuCGGCCAGUGCGAgcuGCACGg- -3' miRNA: 3'- -AGGGUacGCUGGUCGCGCU---UGUGCag -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 60648 | 0.68 | 0.607912 |
Target: 5'- gCCCGagGCGugCGGCGUGAcuacccuucgGCcCGUCu -3' miRNA: 3'- aGGGUa-CGCugGUCGCGCU----------UGuGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 33402 | 0.68 | 0.601506 |
Target: 5'- gUCCCGgcguacaccgcggcGCGACCGGCGuCGAugACa-- -3' miRNA: 3'- -AGGGUa-------------CGCUGGUCGC-GCUugUGcag -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 3875 | 0.68 | 0.596175 |
Target: 5'- gCCCAgUGCaGACuucgcguCAGCgGCGAugACGUCg -3' miRNA: 3'- aGGGU-ACG-CUG-------GUCG-CGCUugUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 69001 | 0.68 | 0.650706 |
Target: 5'- -gCCGUGaCGAuggUCAGCGCcucGAugGCGUCg -3' miRNA: 3'- agGGUAC-GCU---GGUCGCG---CUugUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 17978 | 0.68 | 0.607912 |
Target: 5'- gCCCAUGCGGCCAcuccCGCuGAuCACG-Ca -3' miRNA: 3'- aGGGUACGCUGGUc---GCG-CUuGUGCaG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 45585 | 0.68 | 0.650706 |
Target: 5'- gCCCGcaagGUGGCCGGUGCcuccucCGCGUCg -3' miRNA: 3'- aGGGUa---CGCUGGUCGCGcuu---GUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 57582 | 0.67 | 0.672043 |
Target: 5'- gUCUCAgGUGGCCAGCcuGgGAAC-CGUCc -3' miRNA: 3'- -AGGGUaCGCUGGUCG--CgCUUGuGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 41768 | 0.67 | 0.682663 |
Target: 5'- gCCgAUGcCGACC-GCGCuGAACAUGgUCa -3' miRNA: 3'- aGGgUAC-GCUGGuCGCG-CUUGUGC-AG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 26398 | 0.67 | 0.661388 |
Target: 5'- aCCCG-GCG--CAGUGCGGcCACGUCg -3' miRNA: 3'- aGGGUaCGCugGUCGCGCUuGUGCAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 57377 | 0.67 | 0.703756 |
Target: 5'- uUCCCAUGgGuCgAGCGCagGAACAUcUCa -3' miRNA: 3'- -AGGGUACgCuGgUCGCG--CUUGUGcAG- -5' |
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18293 | 3' | -56.3 | NC_004681.1 | + | 31540 | 0.67 | 0.693238 |
Target: 5'- gUCCCGcaaGAUCAGUGgGAcCGCGUCu -3' miRNA: 3'- -AGGGUacgCUGGUCGCgCUuGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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