Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18293 | 3' | -56.3 | NC_004681.1 | + | 53450 | 0.69 | 0.586598 |
|
Target: 5'- aCCCAcucgucUGgGGCCAuGCGUGAGCGCa-- -3' miRNA: 3'- aGGGU------ACgCUGGU-CGCGCUUGUGcag -5' |
|||||||
| 18293 | 3' | -56.3 | NC_004681.1 | + | 16442 | 0.69 | 0.565428 |
|
Target: 5'- aCCCAUgGUGGucUCGGCGUGGugGCGUUc -3' miRNA: 3'- aGGGUA-CGCU--GGUCGCGCUugUGCAG- -5' |
|||||||
| 18293 | 3' | -56.3 | NC_004681.1 | + | 41904 | 0.69 | 0.554916 |
|
Target: 5'- cCCCGggagGCGGCgucuuccacugCGGCGCGAAgGcCGUCg -3' miRNA: 3'- aGGGUa---CGCUG-----------GUCGCGCUUgU-GCAG- -5' |
|||||||
| 18293 | 3' | -56.3 | NC_004681.1 | + | 6785 | 0.69 | 0.534073 |
|
Target: 5'- cUUCCGcuCGGCCAGUGCGAgcuGCACGg- -3' miRNA: 3'- -AGGGUacGCUGGUCGCGCU---UGUGCag -5' |
|||||||
| 18293 | 3' | -56.3 | NC_004681.1 | + | 13672 | 0.7 | 0.513514 |
|
Target: 5'- gCCC--GCGGCCuugaAGCGCGcgUACGUCu -3' miRNA: 3'- aGGGuaCGCUGG----UCGCGCuuGUGCAG- -5' |
|||||||
| 18293 | 3' | -56.3 | NC_004681.1 | + | 70468 | 0.7 | 0.493287 |
|
Target: 5'- gUCC-UGCGGCC-GCGCGuAgACGUCa -3' miRNA: 3'- aGGGuACGCUGGuCGCGCuUgUGCAG- -5' |
|||||||
| 18293 | 3' | -56.3 | NC_004681.1 | + | 57896 | 0.71 | 0.473433 |
|
Target: 5'- aCCUcgGCGGCgCGGCGCGugguCGCGgUCu -3' miRNA: 3'- aGGGuaCGCUG-GUCGCGCuu--GUGC-AG- -5' |
|||||||
| 18293 | 3' | -56.3 | NC_004681.1 | + | 7970 | 0.73 | 0.331444 |
|
Target: 5'- gUCUCAU-CGACgGGCGCGGGCucuuCGUCa -3' miRNA: 3'- -AGGGUAcGCUGgUCGCGCUUGu---GCAG- -5' |
|||||||
| 18293 | 3' | -56.3 | NC_004681.1 | + | 28795 | 1.11 | 0.000919 |
|
Target: 5'- gUCCCAUGCGACCAGCGCGAACACGUCa -3' miRNA: 3'- -AGGGUACGCUGGUCGCGCUUGUGCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home