miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 25350 0.66 0.69641
Target:  5'- aGCGcACCcaacCGCCGccgcgGGCGCCAuGGCCg -3'
miRNA:   3'- cCGC-UGGa---GCGGUca---CUGCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 31239 0.66 0.695383
Target:  5'- gGGgGACCggCGCCgAGUGuuuggcuacggcaACGUCggAGACCu -3'
miRNA:   3'- -CCgCUGGa-GCGG-UCAC-------------UGCGG--UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 10757 0.66 0.686114
Target:  5'- -aCGGCCgcgggCaCCGGgGGCGCCAGGCa -3'
miRNA:   3'- ccGCUGGa----GcGGUCaCUGCGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 55959 0.66 0.686114
Target:  5'- uGGaCaACCUCGUCGG-GGUGCCGGugCu -3'
miRNA:   3'- -CC-GcUGGAGCGGUCaCUGCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 22480 0.66 0.686114
Target:  5'- cGGCGACaaCGCCAccaucaucGGCGCCucGGACg -3'
miRNA:   3'- -CCGCUGgaGCGGUca------CUGCGG--UCUGg -5'
18294 3' -58.3 NC_004681.1 + 29765 0.66 0.686114
Target:  5'- cGCGACCUgcUGCCAGgugcaGCCAG-CUu -3'
miRNA:   3'- cCGCUGGA--GCGGUCacug-CGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 8504 0.66 0.675772
Target:  5'- gGGCGcCUUCGCggaCGGUGAgacCGCCcccgcGGCCa -3'
miRNA:   3'- -CCGCuGGAGCG---GUCACU---GCGGu----CUGG- -5'
18294 3' -58.3 NC_004681.1 + 13447 0.66 0.675772
Target:  5'- cGGCGAgccgaugaaggaCCUCGCgGGcaauccgaUGAC-CCGGAUCg -3'
miRNA:   3'- -CCGCU------------GGAGCGgUC--------ACUGcGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 53671 0.66 0.665392
Target:  5'- uGGagGACCUUGCCGGUGGCGaCGuuCUu -3'
miRNA:   3'- -CCg-CUGGAGCGGUCACUGCgGUcuGG- -5'
18294 3' -58.3 NC_004681.1 + 51295 0.66 0.665392
Target:  5'- -cCGACCUCuacaugGCCGGUGAgucCGCC-GACg -3'
miRNA:   3'- ccGCUGGAG------CGGUCACU---GCGGuCUGg -5'
18294 3' -58.3 NC_004681.1 + 59003 0.66 0.663313
Target:  5'- --aGACCUCGUgGGggagGGCGCCcaccgcgaauuuGACCa -3'
miRNA:   3'- ccgCUGGAGCGgUCa---CUGCGGu-----------CUGG- -5'
18294 3' -58.3 NC_004681.1 + 5435 0.66 0.654985
Target:  5'- aGGCGugCcagCGCCuGUGcGCGCUuGGCa -3'
miRNA:   3'- -CCGCugGa--GCGGuCAC-UGCGGuCUGg -5'
18294 3' -58.3 NC_004681.1 + 13244 0.66 0.654985
Target:  5'- cGCGACCgccgcgucaagcUCGCCGaauuccGCGuCCAGGCCa -3'
miRNA:   3'- cCGCUGG------------AGCGGUcac---UGC-GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 40131 0.66 0.654985
Target:  5'- cGGUGACCgC-CCGG-GACaGgCAGGCCg -3'
miRNA:   3'- -CCGCUGGaGcGGUCaCUG-CgGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 9086 0.66 0.654985
Target:  5'- cGGUGGCCga---GGUGGCGCCgacagcgaggAGGCCg -3'
miRNA:   3'- -CCGCUGGagcggUCACUGCGG----------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 32780 0.66 0.654985
Target:  5'- cGCGACgUCGgCGGgguAC-CCGGACCa -3'
miRNA:   3'- cCGCUGgAGCgGUCac-UGcGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 60685 0.66 0.654985
Target:  5'- cGGCGGCCUCGUCGagcaccacGUu-CGUCGG-CCa -3'
miRNA:   3'- -CCGCUGGAGCGGU--------CAcuGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 26320 0.66 0.654985
Target:  5'- gGGCGGgCaUCGCCGccGUGGCggGCCAGgACg -3'
miRNA:   3'- -CCGCUgG-AGCGGU--CACUG--CGGUC-UGg -5'
18294 3' -58.3 NC_004681.1 + 36744 0.66 0.653943
Target:  5'- --gGACCccacuuUCGCCAG-GAuuaccagcgcgucUGCCAGGCCg -3'
miRNA:   3'- ccgCUGG------AGCGGUCaCU-------------GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 22823 0.66 0.644559
Target:  5'- uGGCGGCCgUGCCGGUGuucugggucuguGC-CCAcACCa -3'
miRNA:   3'- -CCGCUGGaGCGGUCAC------------UGcGGUcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.