miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 24839 0.67 0.62264
Target:  5'- uGGUGAUCUCccccguuGCCGGUgucgacugcGAUGCC-GACCc -3'
miRNA:   3'- -CCGCUGGAG-------CGGUCA---------CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 1533 0.67 0.613253
Target:  5'- -aUGACCcCGCCcGcGGCGCCAauGGCCg -3'
miRNA:   3'- ccGCUGGaGCGGuCaCUGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 27120 0.67 0.610126
Target:  5'- aGGCGACCgCGUaggCGGUGugccauccguagccGCuGCCAGACa -3'
miRNA:   3'- -CCGCUGGaGCG---GUCAC--------------UG-CGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 62363 0.67 0.623684
Target:  5'- cGGUGAUCUUGCCcccggcgcGGUgGACGa-AGACCu -3'
miRNA:   3'- -CCGCUGGAGCGG--------UCA-CUGCggUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 2776 0.67 0.613253
Target:  5'- aGCagUCgCGCCAGUGACGCUcggagacguaggAGACCc -3'
miRNA:   3'- cCGcuGGaGCGGUCACUGCGG------------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 50380 0.67 0.602836
Target:  5'- cGGgGACgUgGCCcuucuugcGGUgGGCGCgGGACCa -3'
miRNA:   3'- -CCgCUGgAgCGG--------UCA-CUGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 65214 0.68 0.547161
Target:  5'- uGGCGGCCguacuucagggCGCCuuccaucauUGCCAGGCCg -3'
miRNA:   3'- -CCGCUGGa----------GCGGucacu----GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 44262 0.68 0.551238
Target:  5'- gGGCGccguaGCaCUCguauucgcgGCCGGUGAgGgCCAGGCCc -3'
miRNA:   3'- -CCGC-----UG-GAG---------CGGUCACUgC-GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 40652 0.68 0.530954
Target:  5'- cGGCGACgCUCgGUgAGUGGCuCCAcucccuGACCg -3'
miRNA:   3'- -CCGCUG-GAG-CGgUCACUGcGGU------CUGG- -5'
18294 3' -58.3 NC_004681.1 + 69006 0.68 0.53499
Target:  5'- cGGCGGCCgugacgauggucagCGCCucgaUGGCGUCGG-CCg -3'
miRNA:   3'- -CCGCUGGa-------------GCGGuc--ACUGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 68517 0.68 0.561469
Target:  5'- cGCGGCa-CGCCuG-GGCGCCAuGCCg -3'
miRNA:   3'- cCGCUGgaGCGGuCaCUGCGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 16366 0.68 0.561469
Target:  5'- uGGCGACgagggCGCCaAGUGGguUGCCucGGCCa -3'
miRNA:   3'- -CCGCUGga---GCGG-UCACU--GCGGu-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 27893 0.68 0.551238
Target:  5'- gGGCGGCaccaaCUCGuCCAGUagcgGcACGCgGGGCCu -3'
miRNA:   3'- -CCGCUG-----GAGC-GGUCA----C-UGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 46911 0.68 0.541064
Target:  5'- cGGCGACUgguUCGCUggcacuaccuacGGUGAgGCCGccGACUc -3'
miRNA:   3'- -CCGCUGG---AGCGG------------UCACUgCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 57081 0.68 0.541064
Target:  5'- aGGCGucuGCCUcCGCCAG-GACGgaCUAGugCc -3'
miRNA:   3'- -CCGC---UGGA-GCGGUCaCUGC--GGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 13875 0.68 0.520914
Target:  5'- aGGCGACUggUCcCCGGaUGAguaCGCaCAGGCCg -3'
miRNA:   3'- -CCGCUGG--AGcGGUC-ACU---GCG-GUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 10313 0.68 0.561469
Target:  5'- cGGgGAgCCaggGCCAgGUGugGCCGGugCu -3'
miRNA:   3'- -CCgCU-GGag-CGGU-CACugCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 6512 0.68 0.551238
Target:  5'- aGGaGugCUgGCCGGUcgcuucGGCGCCGGgGCCu -3'
miRNA:   3'- -CCgCugGAgCGGUCA------CUGCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 3726 0.69 0.481552
Target:  5'- gGGCGGCCugcuucuugUCGCgGGcGACGCCguagauuucaccGGACUg -3'
miRNA:   3'- -CCGCUGG---------AGCGgUCaCUGCGG------------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 17938 0.69 0.491263
Target:  5'- gGGCGcCCggGUUGGUGAgGCCGGugCc -3'
miRNA:   3'- -CCGCuGGagCGGUCACUgCGGUCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.