miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 3726 0.69 0.481552
Target:  5'- gGGCGGCCugcuucuugUCGCgGGcGACGCCguagauuucaccGGACUg -3'
miRNA:   3'- -CCGCUGG---------AGCGgUCaCUGCGG------------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 14983 0.69 0.48834
Target:  5'- cGGCGACCUgcgaggcggggaugUGgaagucgaCCAGggugGugGUCAGACCg -3'
miRNA:   3'- -CCGCUGGA--------------GC--------GGUCa---CugCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 17938 0.69 0.491263
Target:  5'- gGGCGcCCggGUUGGUGAgGCCGGugCc -3'
miRNA:   3'- -CCGCuGGagCGGUCACUgCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 8877 0.69 0.491263
Target:  5'- uGGCGACCUUGCCGacc-UGCUcguAGACCc -3'
miRNA:   3'- -CCGCUGGAGCGGUcacuGCGG---UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 6111 0.69 0.501063
Target:  5'- gGGCGAUgUCGUa---GACGCCgcAGACCu -3'
miRNA:   3'- -CCGCUGgAGCGgucaCUGCGG--UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 61890 0.69 0.481552
Target:  5'- aGGCGuGCCUCaaCCAGuUGGCGCUguggcaccgcgaGGACCc -3'
miRNA:   3'- -CCGC-UGGAGc-GGUC-ACUGCGG------------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 29147 0.69 0.481552
Target:  5'- uGGCGACCUCaaCGGccACGUCAacGACCa -3'
miRNA:   3'- -CCGCUGGAGcgGUCacUGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 47732 0.69 0.501063
Target:  5'- aGGaCGACaUCGCCAGUGcAUucacugGCCAGAUg -3'
miRNA:   3'- -CC-GCUGgAGCGGUCAC-UG------CGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 59775 0.69 0.501063
Target:  5'- aGUG-CCUCGcCCAGUGcuCGCUGGACg -3'
miRNA:   3'- cCGCuGGAGC-GGUCACu-GCGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 21317 0.69 0.501063
Target:  5'- aGGCGACCaUCGUCGugGACGUgGucGACCg -3'
miRNA:   3'- -CCGCUGG-AGCGGUcaCUGCGgU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 39792 0.69 0.501063
Target:  5'- cGCGACCaUCGCCucccacgccucGUGGgGCaAGACCg -3'
miRNA:   3'- cCGCUGG-AGCGGu----------CACUgCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 15993 0.7 0.453001
Target:  5'- cGGCGAUCUUcaCGGUGAcccacgcggcCGCCAGGCUc -3'
miRNA:   3'- -CCGCUGGAGcgGUCACU----------GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 22961 0.7 0.453001
Target:  5'- uGGUGACCUUGgUGGUGGCGCUgucgaacgcggGGAUg -3'
miRNA:   3'- -CCGCUGGAGCgGUCACUGCGG-----------UCUGg -5'
18294 3' -58.3 NC_004681.1 + 18833 0.7 0.434487
Target:  5'- cGCGGCCUCGCCGccGuCGCCcuuGGCg -3'
miRNA:   3'- cCGCUGGAGCGGUcaCuGCGGu--CUGg -5'
18294 3' -58.3 NC_004681.1 + 16121 0.7 0.425397
Target:  5'- cGGCGcCCUUGCCAGcagccggGACGaugcCCAGAUa -3'
miRNA:   3'- -CCGCuGGAGCGGUCa------CUGC----GGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 17833 0.7 0.425397
Target:  5'- uGGCGACCUCGgUguuGUGcUGCUuGACCg -3'
miRNA:   3'- -CCGCUGGAGCgGu--CACuGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 28053 0.7 0.425397
Target:  5'- aGUGACgCagugaCGCCAGUGAUGCCAcaGCCg -3'
miRNA:   3'- cCGCUG-Ga----GCGGUCACUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 17553 0.7 0.415529
Target:  5'- uGGCGGcacccCCUUcaacuggGgCAGUGACGCCGcGGCCa -3'
miRNA:   3'- -CCGCU-----GGAG-------CgGUCACUGCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 451 0.7 0.44369
Target:  5'- gGGCGuccaACCUgGCCgAGUucguggggaGGCGCCuGGCCg -3'
miRNA:   3'- -CCGC----UGGAgCGG-UCA---------CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 51488 0.7 0.45113
Target:  5'- gGGCGACCgcugcCGCCAGcucggcuacaccGACGCCAccACCu -3'
miRNA:   3'- -CCGCUGGa----GCGGUCa-----------CUGCGGUc-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.