miRNA display CGI


Results 81 - 100 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 12364 0.7 0.434487
Target:  5'- gGGCGACCUCGggAGUcGGCcacagcaCCGGGCCa -3'
miRNA:   3'- -CCGCUGGAGCggUCA-CUGc------GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 47026 0.7 0.41642
Target:  5'- cGGCGGCCUCaccguagguaguGCCAGcGAaccaguccCGCgAGGCCc -3'
miRNA:   3'- -CCGCUGGAG------------CGGUCaCU--------GCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 15993 0.7 0.453001
Target:  5'- cGGCGAUCUUcaCGGUGAcccacgcggcCGCCAGGCUc -3'
miRNA:   3'- -CCGCUGGAGcgGUCACU----------GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 28053 0.7 0.425397
Target:  5'- aGUGACgCagugaCGCCAGUGAUGCCAcaGCCg -3'
miRNA:   3'- cCGCUG-Ga----GCGGUCACUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 32134 0.71 0.365082
Target:  5'- cGGCGGCCcaCGCCAacGACcaGCUGGACCg -3'
miRNA:   3'- -CCGCUGGa-GCGGUcaCUG--CGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 30525 0.71 0.373329
Target:  5'- -aCGGCCgguaccaGCCGG-GACGCCAGuCCg -3'
miRNA:   3'- ccGCUGGag-----CGGUCaCUGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 64497 0.71 0.365082
Target:  5'- uGGCGaauGCCUCGUaCAGgacGAUGCCGGugGCCa -3'
miRNA:   3'- -CCGC---UGGAGCG-GUCa--CUGCGGUC--UGG- -5'
18294 3' -58.3 NC_004681.1 + 40385 0.71 0.373329
Target:  5'- aGCGGCaC-CGCCAGcGugGCCGGugUc -3'
miRNA:   3'- cCGCUG-GaGCGGUCaCugCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 27730 0.71 0.398819
Target:  5'- cGGCGACCagagcCGCCGccGcCGCCAGcGCCa -3'
miRNA:   3'- -CCGCUGGa----GCGGUcaCuGCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 562 0.71 0.398819
Target:  5'- aGGCG-CCUCcccacgaacucgGCCAGguugGACGCCcagcggAGGCCc -3'
miRNA:   3'- -CCGCuGGAG------------CGGUCa---CUGCGG------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 24065 0.72 0.325762
Target:  5'- uGGaCG-CCaUUGUCGGUGGCGCCguGGGCCa -3'
miRNA:   3'- -CC-GCuGG-AGCGGUCACUGCGG--UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 4178 0.72 0.348969
Target:  5'- aGCGACCcagCGCgGGguUGGCGUgGGGCCa -3'
miRNA:   3'- cCGCUGGa--GCGgUC--ACUGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 27693 0.72 0.318286
Target:  5'- gGGUGACCcaggCGCCuGUGGugccUGCCGGuACCg -3'
miRNA:   3'- -CCGCUGGa---GCGGuCACU----GCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 61639 0.72 0.348969
Target:  5'- aGGCGACCaUCGCCaAGcuGCGCgCAGaaGCCg -3'
miRNA:   3'- -CCGCUGG-AGCGG-UCacUGCG-GUC--UGG- -5'
18294 3' -58.3 NC_004681.1 + 69538 0.73 0.289676
Target:  5'- cGGCGGCCgUGCCccgacugcaAGUGACGUgaaaAGGCCg -3'
miRNA:   3'- -CCGCUGGaGCGG---------UCACUGCGg---UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 13594 0.73 0.276144
Target:  5'- gGGCGGCCaCGCCAaUGACGuCCAGcUCg -3'
miRNA:   3'- -CCGCUGGaGCGGUcACUGC-GGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 16196 0.73 0.276144
Target:  5'- uGGCGGCUgugcgCGCCgcgguGGUGACGCC--ACCg -3'
miRNA:   3'- -CCGCUGGa----GCGG-----UCACUGCGGucUGG- -5'
18294 3' -58.3 NC_004681.1 + 32208 0.73 0.296634
Target:  5'- cGGUGACCgcuuccuggaUGCCGGUGACGaCCuugucGGCCg -3'
miRNA:   3'- -CCGCUGGa---------GCGGUCACUGC-GGu----CUGG- -5'
18294 3' -58.3 NC_004681.1 + 24944 0.73 0.282846
Target:  5'- uGGCGGCCgccgcccgCGCCGccGACGCCGaugaggucGACCg -3'
miRNA:   3'- -CCGCUGGa-------GCGGUcaCUGCGGU--------CUGG- -5'
18294 3' -58.3 NC_004681.1 + 3281 0.73 0.282846
Target:  5'- aGGCGugUUCGgcCCAGUGAUGaCC-GACCc -3'
miRNA:   3'- -CCGCugGAGC--GGUCACUGC-GGuCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.