miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 61639 0.72 0.348969
Target:  5'- aGGCGACCaUCGCCaAGcuGCGCgCAGaaGCCg -3'
miRNA:   3'- -CCGCUGG-AGCGG-UCacUGCG-GUC--UGG- -5'
18294 3' -58.3 NC_004681.1 + 4178 0.72 0.348969
Target:  5'- aGCGACCcagCGCgGGguUGGCGUgGGGCCa -3'
miRNA:   3'- cCGCUGGa--GCGgUC--ACUGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 24065 0.72 0.325762
Target:  5'- uGGaCG-CCaUUGUCGGUGGCGCCguGGGCCa -3'
miRNA:   3'- -CC-GCuGG-AGCGGUCACUGCGG--UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 40385 0.71 0.373329
Target:  5'- aGCGGCaC-CGCCAGcGugGCCGGugUc -3'
miRNA:   3'- cCGCUG-GaGCGGUCaCugCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 32134 0.71 0.365082
Target:  5'- cGGCGGCCcaCGCCAacGACcaGCUGGACCg -3'
miRNA:   3'- -CCGCUGGa-GCGGUcaCUG--CGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 30525 0.71 0.373329
Target:  5'- -aCGGCCgguaccaGCCGG-GACGCCAGuCCg -3'
miRNA:   3'- ccGCUGGag-----CGGUCaCUGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 64497 0.71 0.365082
Target:  5'- uGGCGaauGCCUCGUaCAGgacGAUGCCGGugGCCa -3'
miRNA:   3'- -CCGC---UGGAGCG-GUCa--CUGCGGUC--UGG- -5'
18294 3' -58.3 NC_004681.1 + 562 0.71 0.398819
Target:  5'- aGGCG-CCUCcccacgaacucgGCCAGguugGACGCCcagcggAGGCCc -3'
miRNA:   3'- -CCGCuGGAG------------CGGUCa---CUGCGG------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 27730 0.71 0.398819
Target:  5'- cGGCGACCagagcCGCCGccGcCGCCAGcGCCa -3'
miRNA:   3'- -CCGCUGGa----GCGGUcaCuGCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 17833 0.7 0.425397
Target:  5'- uGGCGACCUCGgUguuGUGcUGCUuGACCg -3'
miRNA:   3'- -CCGCUGGAGCgGu--CACuGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 17553 0.7 0.415529
Target:  5'- uGGCGGcacccCCUUcaacuggGgCAGUGACGCCGcGGCCa -3'
miRNA:   3'- -CCGCU-----GGAG-------CgGUCACUGCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 18833 0.7 0.434487
Target:  5'- cGCGGCCUCGCCGccGuCGCCcuuGGCg -3'
miRNA:   3'- cCGCUGGAGCGGUcaCuGCGGu--CUGg -5'
18294 3' -58.3 NC_004681.1 + 451 0.7 0.44369
Target:  5'- gGGCGuccaACCUgGCCgAGUucguggggaGGCGCCuGGCCg -3'
miRNA:   3'- -CCGC----UGGAgCGG-UCA---------CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 51488 0.7 0.45113
Target:  5'- gGGCGACCgcugcCGCCAGcucggcuacaccGACGCCAccACCu -3'
miRNA:   3'- -CCGCUGGa----GCGGUCa-----------CUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 12364 0.7 0.434487
Target:  5'- gGGCGACCUCGggAGUcGGCcacagcaCCGGGCCa -3'
miRNA:   3'- -CCGCUGGAGCggUCA-CUGc------GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 28053 0.7 0.425397
Target:  5'- aGUGACgCagugaCGCCAGUGAUGCCAcaGCCg -3'
miRNA:   3'- cCGCUG-Ga----GCGGUCACUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 18209 0.7 0.41642
Target:  5'- cGGUG-CCUgGCCGGgGGCGCCGauGCCg -3'
miRNA:   3'- -CCGCuGGAgCGGUCaCUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 47026 0.7 0.41642
Target:  5'- cGGCGGCCUCaccguagguaguGCCAGcGAaccaguccCGCgAGGCCc -3'
miRNA:   3'- -CCGCUGGAG------------CGGUCaCU--------GCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 16121 0.7 0.425397
Target:  5'- cGGCGcCCUUGCCAGcagccggGACGaugcCCAGAUa -3'
miRNA:   3'- -CCGCuGGAGCGGUCa------CUGC----GGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 30255 0.7 0.434487
Target:  5'- cGGCGGCg--GCCGGUacGGCGUCgAGACCa -3'
miRNA:   3'- -CCGCUGgagCGGUCA--CUGCGG-UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.