miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 29518 1.14 0.000388
Target:  5'- aGGCGACCUCGCCAGUGACGCCAGACCa -3'
miRNA:   3'- -CCGCUGGAGCGGUCACUGCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 7609 0.79 0.115866
Target:  5'- cGCGACUUCGCCGacGAUgGCCAGACCg -3'
miRNA:   3'- cCGCUGGAGCGGUcaCUG-CGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 38982 0.77 0.167407
Target:  5'- aGGCuGGCCUUcuCCAGUGGCGCCAGcucuCCu -3'
miRNA:   3'- -CCG-CUGGAGc-GGUCACUGCGGUCu---GG- -5'
18294 3' -58.3 NC_004681.1 + 12401 0.76 0.195244
Target:  5'- cGGCGACgCUCGUCGGUGA-GCCGguGACg -3'
miRNA:   3'- -CCGCUG-GAGCGGUCACUgCGGU--CUGg -5'
18294 3' -58.3 NC_004681.1 + 18344 0.75 0.221455
Target:  5'- uGGCGGgCUCGgguucacccCCGGUGGCGCCaucgacauggcAGGCCa -3'
miRNA:   3'- -CCGCUgGAGC---------GGUCACUGCGG-----------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 68735 0.75 0.227044
Target:  5'- uGGC-ACCgcggugUGUCAGUGgcACGCCAGGCCg -3'
miRNA:   3'- -CCGcUGGa-----GCGGUCAC--UGCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 41999 0.75 0.227044
Target:  5'- gGGCGAUCUCgGCCAGccuugucGACGCCA-ACCu -3'
miRNA:   3'- -CCGCUGGAG-CGGUCa------CUGCGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 19201 0.75 0.229313
Target:  5'- uGCGaACCUCGCgccggguguccugggUGGUGACGCCGGAUg -3'
miRNA:   3'- cCGC-UGGAGCG---------------GUCACUGCGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 7211 0.74 0.237993
Target:  5'- aGGCGGCCggUGCCGGUaacGGCGacaccgcgcuucuCCAGGCCa -3'
miRNA:   3'- -CCGCUGGa-GCGGUCA---CUGC-------------GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 24202 0.74 0.250604
Target:  5'- aGGCG-UC-CGCCAGgcUGGCGCCGGAaCCu -3'
miRNA:   3'- -CCGCuGGaGCGGUC--ACUGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 28841 0.74 0.256801
Target:  5'- uGGCGACaccgUCGUaGGUGAUGCCAGuuacGCCg -3'
miRNA:   3'- -CCGCUGg---AGCGgUCACUGCGGUC----UGG- -5'
18294 3' -58.3 NC_004681.1 + 53642 0.74 0.272184
Target:  5'- cGGCGcCCUgGUCGGUGucgucauccacaagcGCGCCGGAaCCa -3'
miRNA:   3'- -CCGCuGGAgCGGUCAC---------------UGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 13594 0.73 0.276144
Target:  5'- gGGCGGCCaCGCCAaUGACGuCCAGcUCg -3'
miRNA:   3'- -CCGCUGGaGCGGUcACUGC-GGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 16196 0.73 0.276144
Target:  5'- uGGCGGCUgugcgCGCCgcgguGGUGACGCC--ACCg -3'
miRNA:   3'- -CCGCUGGa----GCGG-----UCACUGCGGucUGG- -5'
18294 3' -58.3 NC_004681.1 + 28519 0.73 0.28217
Target:  5'- cGCGAgCUCcaucuccgcgggaGCCggGGUGAcCGCCAGGCCa -3'
miRNA:   3'- cCGCUgGAG-------------CGG--UCACU-GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 3281 0.73 0.282846
Target:  5'- aGGCGugUUCGgcCCAGUGAUGaCC-GACCc -3'
miRNA:   3'- -CCGCugGAGC--GGUCACUGC-GGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 24944 0.73 0.282846
Target:  5'- uGGCGGCCgccgcccgCGCCGccGACGCCGaugaggucGACCg -3'
miRNA:   3'- -CCGCUGGa-------GCGGUcaCUGCGGU--------CUGG- -5'
18294 3' -58.3 NC_004681.1 + 69538 0.73 0.289676
Target:  5'- cGGCGGCCgUGCCccgacugcaAGUGACGUgaaaAGGCCg -3'
miRNA:   3'- -CCGCUGGaGCGG---------UCACUGCGg---UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 32208 0.73 0.296634
Target:  5'- cGGUGACCgcuuccuggaUGCCGGUGACGaCCuugucGGCCg -3'
miRNA:   3'- -CCGCUGGa---------GCGGUCACUGC-GGu----CUGG- -5'
18294 3' -58.3 NC_004681.1 + 27693 0.72 0.318286
Target:  5'- gGGUGACCcaggCGCCuGUGGugccUGCCGGuACCg -3'
miRNA:   3'- -CCGCUGGa---GCGGuCACU----GCGGUC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.