Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18294 | 3' | -58.3 | NC_004681.1 | + | 15993 | 0.7 | 0.453001 |
Target: 5'- cGGCGAUCUUcaCGGUGAcccacgcggcCGCCAGGCUc -3' miRNA: 3'- -CCGCUGGAGcgGUCACU----------GCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 22961 | 0.7 | 0.453001 |
Target: 5'- uGGUGACCUUGgUGGUGGCGCUgucgaacgcggGGAUg -3' miRNA: 3'- -CCGCUGGAGCgGUCACUGCGG-----------UCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 58881 | 0.69 | 0.481552 |
Target: 5'- gGGCGcgcGCCUCGaCGGUG-CGCguGACa -3' miRNA: 3'- -CCGC---UGGAGCgGUCACuGCGguCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 61890 | 0.69 | 0.481552 |
Target: 5'- aGGCGuGCCUCaaCCAGuUGGCGCUguggcaccgcgaGGACCc -3' miRNA: 3'- -CCGC-UGGAGc-GGUC-ACUGCGG------------UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 29147 | 0.69 | 0.481552 |
Target: 5'- uGGCGACCUCaaCGGccACGUCAacGACCa -3' miRNA: 3'- -CCGCUGGAGcgGUCacUGCGGU--CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 3726 | 0.69 | 0.481552 |
Target: 5'- gGGCGGCCugcuucuugUCGCgGGcGACGCCguagauuucaccGGACUg -3' miRNA: 3'- -CCGCUGG---------AGCGgUCaCUGCGG------------UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 51876 | 0.69 | 0.481552 |
Target: 5'- cGGCGGCCUUGgaGaUGAUGUuCAGACCg -3' miRNA: 3'- -CCGCUGGAGCggUcACUGCG-GUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 14983 | 0.69 | 0.48834 |
Target: 5'- cGGCGACCUgcgaggcggggaugUGgaagucgaCCAGggugGugGUCAGACCg -3' miRNA: 3'- -CCGCUGGA--------------GC--------GGUCa---CugCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 17938 | 0.69 | 0.491263 |
Target: 5'- gGGCGcCCggGUUGGUGAgGCCGGugCc -3' miRNA: 3'- -CCGCuGGagCGGUCACUgCGGUCugG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 8877 | 0.69 | 0.491263 |
Target: 5'- uGGCGACCUUGCCGacc-UGCUcguAGACCc -3' miRNA: 3'- -CCGCUGGAGCGGUcacuGCGG---UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 21317 | 0.69 | 0.501063 |
Target: 5'- aGGCGACCaUCGUCGugGACGUgGucGACCg -3' miRNA: 3'- -CCGCUGG-AGCGGUcaCUGCGgU--CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 39792 | 0.69 | 0.501063 |
Target: 5'- cGCGACCaUCGCCucccacgccucGUGGgGCaAGACCg -3' miRNA: 3'- cCGCUGG-AGCGGu----------CACUgCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 47732 | 0.69 | 0.501063 |
Target: 5'- aGGaCGACaUCGCCAGUGcAUucacugGCCAGAUg -3' miRNA: 3'- -CC-GCUGgAGCGGUCAC-UG------CGGUCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 59775 | 0.69 | 0.501063 |
Target: 5'- aGUG-CCUCGcCCAGUGcuCGCUGGACg -3' miRNA: 3'- cCGCuGGAGC-GGUCACu-GCGGUCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 6111 | 0.69 | 0.501063 |
Target: 5'- gGGCGAUgUCGUa---GACGCCgcAGACCu -3' miRNA: 3'- -CCGCUGgAGCGgucaCUGCGG--UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 13875 | 0.68 | 0.520914 |
Target: 5'- aGGCGACUggUCcCCGGaUGAguaCGCaCAGGCCg -3' miRNA: 3'- -CCGCUGG--AGcGGUC-ACU---GCG-GUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40652 | 0.68 | 0.530954 |
Target: 5'- cGGCGACgCUCgGUgAGUGGCuCCAcucccuGACCg -3' miRNA: 3'- -CCGCUG-GAG-CGgUCACUGcGGU------CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 69006 | 0.68 | 0.53499 |
Target: 5'- cGGCGGCCgugacgauggucagCGCCucgaUGGCGUCGG-CCg -3' miRNA: 3'- -CCGCUGGa-------------GCGGuc--ACUGCGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 46911 | 0.68 | 0.541064 |
Target: 5'- cGGCGACUgguUCGCUggcacuaccuacGGUGAgGCCGccGACUc -3' miRNA: 3'- -CCGCUGG---AGCGG------------UCACUgCGGU--CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 57081 | 0.68 | 0.541064 |
Target: 5'- aGGCGucuGCCUcCGCCAG-GACGgaCUAGugCc -3' miRNA: 3'- -CCGC---UGGA-GCGGUCaCUGC--GGUCugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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