miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 65214 0.68 0.547161
Target:  5'- uGGCGGCCguacuucagggCGCCuuccaucauUGCCAGGCCg -3'
miRNA:   3'- -CCGCUGGa----------GCGGucacu----GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 6512 0.68 0.551238
Target:  5'- aGGaGugCUgGCCGGUcgcuucGGCGCCGGgGCCu -3'
miRNA:   3'- -CCgCugGAgCGGUCA------CUGCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 44262 0.68 0.551238
Target:  5'- gGGCGccguaGCaCUCguauucgcgGCCGGUGAgGgCCAGGCCc -3'
miRNA:   3'- -CCGC-----UG-GAG---------CGGUCACUgC-GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 27893 0.68 0.551238
Target:  5'- gGGCGGCaccaaCUCGuCCAGUagcgGcACGCgGGGCCu -3'
miRNA:   3'- -CCGCUG-----GAGC-GGUCA----C-UGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 10313 0.68 0.561469
Target:  5'- cGGgGAgCCaggGCCAgGUGugGCCGGugCu -3'
miRNA:   3'- -CCgCU-GGag-CGGU-CACugCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 16366 0.68 0.561469
Target:  5'- uGGCGACgagggCGCCaAGUGGguUGCCucGGCCa -3'
miRNA:   3'- -CCGCUGga---GCGG-UCACU--GCGGu-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 68517 0.68 0.561469
Target:  5'- cGCGGCa-CGCCuG-GGCGCCAuGCCg -3'
miRNA:   3'- cCGCUGgaGCGGuCaCUGCGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 48228 0.67 0.582078
Target:  5'- uGGC--CCUCGCCgAGgcuCGCCAGuCCg -3'
miRNA:   3'- -CCGcuGGAGCGG-UCacuGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 33535 0.67 0.582078
Target:  5'- cGGUGAUccaCUCGCCGGUcauGAgGCCcGAgCCa -3'
miRNA:   3'- -CCGCUG---GAGCGGUCA---CUgCGGuCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 16702 0.67 0.582078
Target:  5'- cGCGGCCugcaguugcaggUCGaCCGGgGACGCCGGGg- -3'
miRNA:   3'- cCGCUGG------------AGC-GGUCaCUGCGGUCUgg -5'
18294 3' -58.3 NC_004681.1 + 68888 0.67 0.582078
Target:  5'- cGCGGCCgaCGCCAucgaGGCGCU-GACCa -3'
miRNA:   3'- cCGCUGGa-GCGGUca--CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 39632 0.67 0.582078
Target:  5'- cGGuCGAUCUgaCGCCGG-GAUuGCCAGcCCg -3'
miRNA:   3'- -CC-GCUGGA--GCGGUCaCUG-CGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 10360 0.67 0.592442
Target:  5'- uGGCGagaucgaacgccGCUUCGgCAGUGuCGCUGGcACCu -3'
miRNA:   3'- -CCGC------------UGGAGCgGUCACuGCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 3049 0.67 0.592442
Target:  5'- cGGgGuCCUCGCUGGUGaacucggcGCGCguGGCg -3'
miRNA:   3'- -CCgCuGGAGCGGUCAC--------UGCGguCUGg -5'
18294 3' -58.3 NC_004681.1 + 15886 0.67 0.602836
Target:  5'- uGGCGGCCgCGUgGGUcaccgugaaGAuCGCCGuGGCCg -3'
miRNA:   3'- -CCGCUGGaGCGgUCA---------CU-GCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 44219 0.67 0.602836
Target:  5'- cGCGGCCUCGggGGUGAgGCaGGugCc -3'
miRNA:   3'- cCGCUGGAGCggUCACUgCGgUCugG- -5'
18294 3' -58.3 NC_004681.1 + 39337 0.67 0.602836
Target:  5'- uGGCGcCCUUGCCgcggcgcacGGUGAgcugacaguCGaCCAGGCUg -3'
miRNA:   3'- -CCGCuGGAGCGG---------UCACU---------GC-GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 18540 0.67 0.602836
Target:  5'- uGGCGACCUCcauGCCcuucuggacAGcGAUGCCcGAUCc -3'
miRNA:   3'- -CCGCUGGAG---CGG---------UCaCUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 50380 0.67 0.602836
Target:  5'- cGGgGACgUgGCCcuucuugcGGUgGGCGCgGGACCa -3'
miRNA:   3'- -CCgCUGgAgCGG--------UCA-CUGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 27120 0.67 0.610126
Target:  5'- aGGCGACCgCGUaggCGGUGugccauccguagccGCuGCCAGACa -3'
miRNA:   3'- -CCGCUGGaGCG---GUCAC--------------UG-CGGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.