Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18294 | 3' | -58.3 | NC_004681.1 | + | 1533 | 0.67 | 0.613253 |
Target: 5'- -aUGACCcCGCCcGcGGCGCCAauGGCCg -3' miRNA: 3'- ccGCUGGaGCGGuCaCUGCGGU--CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 2776 | 0.67 | 0.613253 |
Target: 5'- aGCagUCgCGCCAGUGACGCUcggagacguaggAGACCc -3' miRNA: 3'- cCGcuGGaGCGGUCACUGCGG------------UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 51849 | 0.67 | 0.613253 |
Target: 5'- cGGCGuuacucuuGCCcgCGCCGGggcgGcCGCCGacGACCa -3' miRNA: 3'- -CCGC--------UGGa-GCGGUCa---CuGCGGU--CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 12802 | 0.67 | 0.62264 |
Target: 5'- cGGCGACCgacgcagCugcagcacguacgGCCAuUGGCGCCGGuacguCCa -3' miRNA: 3'- -CCGCUGGa------G-------------CGGUcACUGCGGUCu----GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 24839 | 0.67 | 0.62264 |
Target: 5'- uGGUGAUCUCccccguuGCCGGUgucgacugcGAUGCC-GACCc -3' miRNA: 3'- -CCGCUGGAG-------CGGUCA---------CUGCGGuCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 62363 | 0.67 | 0.623684 |
Target: 5'- cGGUGAUCUUGCCcccggcgcGGUgGACGa-AGACCu -3' miRNA: 3'- -CCGCUGGAGCGG--------UCA-CUGCggUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 20416 | 0.67 | 0.623684 |
Target: 5'- aGGUuGCCUUGCgGGggcagGAUGCCGaACCa -3' miRNA: 3'- -CCGcUGGAGCGgUCa----CUGCGGUcUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 25089 | 0.67 | 0.623684 |
Target: 5'- uGCcGCCgaCGCCuGUGcCGCCAGAgCCc -3' miRNA: 3'- cCGcUGGa-GCGGuCACuGCGGUCU-GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 67328 | 0.67 | 0.634122 |
Target: 5'- -uCGACCUgGCC-GUGuCGCaGGGCCu -3' miRNA: 3'- ccGCUGGAgCGGuCACuGCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 52244 | 0.67 | 0.634122 |
Target: 5'- ---aACCUgGCCGGUGGCGaCUcucuGGGCCg -3' miRNA: 3'- ccgcUGGAgCGGUCACUGC-GG----UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 61851 | 0.67 | 0.634122 |
Target: 5'- uGGCGGCCgCGguCUGGUGGCGCgcgaGGGCg -3' miRNA: 3'- -CCGCUGGaGC--GGUCACUGCGg---UCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 25795 | 0.67 | 0.634122 |
Target: 5'- cGGCGAUgUCacguaCAGgccGACGCCuGGCCc -3' miRNA: 3'- -CCGCUGgAGcg---GUCa--CUGCGGuCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 68465 | 0.66 | 0.644559 |
Target: 5'- aGGCuGACCUCGUC-GUGACGaaguCGaACCu -3' miRNA: 3'- -CCG-CUGGAGCGGuCACUGCg---GUcUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 22823 | 0.66 | 0.644559 |
Target: 5'- uGGCGGCCgUGCCGGUGuucugggucuguGC-CCAcACCa -3' miRNA: 3'- -CCGCUGGaGCGGUCAC------------UGcGGUcUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 36744 | 0.66 | 0.653943 |
Target: 5'- --gGACCccacuuUCGCCAG-GAuuaccagcgcgucUGCCAGGCCg -3' miRNA: 3'- ccgCUGG------AGCGGUCaCU-------------GCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 60685 | 0.66 | 0.654985 |
Target: 5'- cGGCGGCCUCGUCGagcaccacGUu-CGUCGG-CCa -3' miRNA: 3'- -CCGCUGGAGCGGU--------CAcuGCGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 9086 | 0.66 | 0.654985 |
Target: 5'- cGGUGGCCga---GGUGGCGCCgacagcgaggAGGCCg -3' miRNA: 3'- -CCGCUGGagcggUCACUGCGG----------UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 13244 | 0.66 | 0.654985 |
Target: 5'- cGCGACCgccgcgucaagcUCGCCGaauuccGCGuCCAGGCCa -3' miRNA: 3'- cCGCUGG------------AGCGGUcac---UGC-GGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40131 | 0.66 | 0.654985 |
Target: 5'- cGGUGACCgC-CCGG-GACaGgCAGGCCg -3' miRNA: 3'- -CCGCUGGaGcGGUCaCUG-CgGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 5435 | 0.66 | 0.654985 |
Target: 5'- aGGCGugCcagCGCCuGUGcGCGCUuGGCa -3' miRNA: 3'- -CCGCugGa--GCGGuCAC-UGCGGuCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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