Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18294 | 3' | -58.3 | NC_004681.1 | + | 25350 | 0.66 | 0.69641 |
Target: 5'- aGCGcACCcaacCGCCGccgcgGGCGCCAuGGCCg -3' miRNA: 3'- cCGC-UGGa---GCGGUca---CUGCGGU-CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 31239 | 0.66 | 0.695383 |
Target: 5'- gGGgGACCggCGCCgAGUGuuuggcuacggcaACGUCggAGACCu -3' miRNA: 3'- -CCgCUGGa-GCGG-UCAC-------------UGCGG--UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 10757 | 0.66 | 0.686114 |
Target: 5'- -aCGGCCgcgggCaCCGGgGGCGCCAGGCa -3' miRNA: 3'- ccGCUGGa----GcGGUCaCUGCGGUCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 55959 | 0.66 | 0.686114 |
Target: 5'- uGGaCaACCUCGUCGG-GGUGCCGGugCu -3' miRNA: 3'- -CC-GcUGGAGCGGUCaCUGCGGUCugG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 22480 | 0.66 | 0.686114 |
Target: 5'- cGGCGACaaCGCCAccaucaucGGCGCCucGGACg -3' miRNA: 3'- -CCGCUGgaGCGGUca------CUGCGG--UCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 29765 | 0.66 | 0.686114 |
Target: 5'- cGCGACCUgcUGCCAGgugcaGCCAG-CUu -3' miRNA: 3'- cCGCUGGA--GCGGUCacug-CGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 8504 | 0.66 | 0.675772 |
Target: 5'- gGGCGcCUUCGCggaCGGUGAgacCGCCcccgcGGCCa -3' miRNA: 3'- -CCGCuGGAGCG---GUCACU---GCGGu----CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 13447 | 0.66 | 0.675772 |
Target: 5'- cGGCGAgccgaugaaggaCCUCGCgGGcaauccgaUGAC-CCGGAUCg -3' miRNA: 3'- -CCGCU------------GGAGCGgUC--------ACUGcGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 53671 | 0.66 | 0.665392 |
Target: 5'- uGGagGACCUUGCCGGUGGCGaCGuuCUu -3' miRNA: 3'- -CCg-CUGGAGCGGUCACUGCgGUcuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 51295 | 0.66 | 0.665392 |
Target: 5'- -cCGACCUCuacaugGCCGGUGAgucCGCC-GACg -3' miRNA: 3'- ccGCUGGAG------CGGUCACU---GCGGuCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 59003 | 0.66 | 0.663313 |
Target: 5'- --aGACCUCGUgGGggagGGCGCCcaccgcgaauuuGACCa -3' miRNA: 3'- ccgCUGGAGCGgUCa---CUGCGGu-----------CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 5435 | 0.66 | 0.654985 |
Target: 5'- aGGCGugCcagCGCCuGUGcGCGCUuGGCa -3' miRNA: 3'- -CCGCugGa--GCGGuCAC-UGCGGuCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 13244 | 0.66 | 0.654985 |
Target: 5'- cGCGACCgccgcgucaagcUCGCCGaauuccGCGuCCAGGCCa -3' miRNA: 3'- cCGCUGG------------AGCGGUcac---UGC-GGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40131 | 0.66 | 0.654985 |
Target: 5'- cGGUGACCgC-CCGG-GACaGgCAGGCCg -3' miRNA: 3'- -CCGCUGGaGcGGUCaCUG-CgGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 9086 | 0.66 | 0.654985 |
Target: 5'- cGGUGGCCga---GGUGGCGCCgacagcgaggAGGCCg -3' miRNA: 3'- -CCGCUGGagcggUCACUGCGG----------UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 32780 | 0.66 | 0.654985 |
Target: 5'- cGCGACgUCGgCGGgguAC-CCGGACCa -3' miRNA: 3'- cCGCUGgAGCgGUCac-UGcGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 60685 | 0.66 | 0.654985 |
Target: 5'- cGGCGGCCUCGUCGagcaccacGUu-CGUCGG-CCa -3' miRNA: 3'- -CCGCUGGAGCGGU--------CAcuGCGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 26320 | 0.66 | 0.654985 |
Target: 5'- gGGCGGgCaUCGCCGccGUGGCggGCCAGgACg -3' miRNA: 3'- -CCGCUgG-AGCGGU--CACUG--CGGUC-UGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 36744 | 0.66 | 0.653943 |
Target: 5'- --gGACCccacuuUCGCCAG-GAuuaccagcgcgucUGCCAGGCCg -3' miRNA: 3'- ccgCUGG------AGCGGUCaCU-------------GCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 22823 | 0.66 | 0.644559 |
Target: 5'- uGGCGGCCgUGCCGGUGuucugggucuguGC-CCAcACCa -3' miRNA: 3'- -CCGCUGGaGCGGUCAC------------UGcGGUcUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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