miRNA display CGI


Results 21 - 40 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 22823 0.66 0.644559
Target:  5'- uGGCGGCCgUGCCGGUGuucugggucuguGC-CCAcACCa -3'
miRNA:   3'- -CCGCUGGaGCGGUCAC------------UGcGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 67328 0.67 0.634122
Target:  5'- -uCGACCUgGCC-GUGuCGCaGGGCCu -3'
miRNA:   3'- ccGCUGGAgCGGuCACuGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 52244 0.67 0.634122
Target:  5'- ---aACCUgGCCGGUGGCGaCUcucuGGGCCg -3'
miRNA:   3'- ccgcUGGAgCGGUCACUGC-GG----UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 61851 0.67 0.634122
Target:  5'- uGGCGGCCgCGguCUGGUGGCGCgcgaGGGCg -3'
miRNA:   3'- -CCGCUGGaGC--GGUCACUGCGg---UCUGg -5'
18294 3' -58.3 NC_004681.1 + 25795 0.67 0.634122
Target:  5'- cGGCGAUgUCacguaCAGgccGACGCCuGGCCc -3'
miRNA:   3'- -CCGCUGgAGcg---GUCa--CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 62363 0.67 0.623684
Target:  5'- cGGUGAUCUUGCCcccggcgcGGUgGACGa-AGACCu -3'
miRNA:   3'- -CCGCUGGAGCGG--------UCA-CUGCggUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 20416 0.67 0.623684
Target:  5'- aGGUuGCCUUGCgGGggcagGAUGCCGaACCa -3'
miRNA:   3'- -CCGcUGGAGCGgUCa----CUGCGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 25089 0.67 0.623684
Target:  5'- uGCcGCCgaCGCCuGUGcCGCCAGAgCCc -3'
miRNA:   3'- cCGcUGGa-GCGGuCACuGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 12802 0.67 0.62264
Target:  5'- cGGCGACCgacgcagCugcagcacguacgGCCAuUGGCGCCGGuacguCCa -3'
miRNA:   3'- -CCGCUGGa------G-------------CGGUcACUGCGGUCu----GG- -5'
18294 3' -58.3 NC_004681.1 + 24839 0.67 0.62264
Target:  5'- uGGUGAUCUCccccguuGCCGGUgucgacugcGAUGCC-GACCc -3'
miRNA:   3'- -CCGCUGGAG-------CGGUCA---------CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 51849 0.67 0.613253
Target:  5'- cGGCGuuacucuuGCCcgCGCCGGggcgGcCGCCGacGACCa -3'
miRNA:   3'- -CCGC--------UGGa-GCGGUCa---CuGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 2776 0.67 0.613253
Target:  5'- aGCagUCgCGCCAGUGACGCUcggagacguaggAGACCc -3'
miRNA:   3'- cCGcuGGaGCGGUCACUGCGG------------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 1533 0.67 0.613253
Target:  5'- -aUGACCcCGCCcGcGGCGCCAauGGCCg -3'
miRNA:   3'- ccGCUGGaGCGGuCaCUGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 27120 0.67 0.610126
Target:  5'- aGGCGACCgCGUaggCGGUGugccauccguagccGCuGCCAGACa -3'
miRNA:   3'- -CCGCUGGaGCG---GUCAC--------------UG-CGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 18540 0.67 0.602836
Target:  5'- uGGCGACCUCcauGCCcuucuggacAGcGAUGCCcGAUCc -3'
miRNA:   3'- -CCGCUGGAG---CGG---------UCaCUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 15886 0.67 0.602836
Target:  5'- uGGCGGCCgCGUgGGUcaccgugaaGAuCGCCGuGGCCg -3'
miRNA:   3'- -CCGCUGGaGCGgUCA---------CU-GCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 44219 0.67 0.602836
Target:  5'- cGCGGCCUCGggGGUGAgGCaGGugCc -3'
miRNA:   3'- cCGCUGGAGCggUCACUgCGgUCugG- -5'
18294 3' -58.3 NC_004681.1 + 39337 0.67 0.602836
Target:  5'- uGGCGcCCUUGCCgcggcgcacGGUGAgcugacaguCGaCCAGGCUg -3'
miRNA:   3'- -CCGCuGGAGCGG---------UCACU---------GC-GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 50380 0.67 0.602836
Target:  5'- cGGgGACgUgGCCcuucuugcGGUgGGCGCgGGACCa -3'
miRNA:   3'- -CCgCUGgAgCGG--------UCA-CUGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 3049 0.67 0.592442
Target:  5'- cGGgGuCCUCGCUGGUGaacucggcGCGCguGGCg -3'
miRNA:   3'- -CCgCuGGAGCGGUCAC--------UGCGguCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.