Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18294 | 3' | -58.3 | NC_004681.1 | + | 3049 | 0.67 | 0.592442 |
Target: 5'- cGGgGuCCUCGCUGGUGaacucggcGCGCguGGCg -3' miRNA: 3'- -CCgCuGGAGCGGUCAC--------UGCGguCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 48228 | 0.67 | 0.582078 |
Target: 5'- uGGC--CCUCGCCgAGgcuCGCCAGuCCg -3' miRNA: 3'- -CCGcuGGAGCGG-UCacuGCGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 16702 | 0.67 | 0.582078 |
Target: 5'- cGCGGCCugcaguugcaggUCGaCCGGgGACGCCGGGg- -3' miRNA: 3'- cCGCUGG------------AGC-GGUCaCUGCGGUCUgg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 39632 | 0.67 | 0.582078 |
Target: 5'- cGGuCGAUCUgaCGCCGG-GAUuGCCAGcCCg -3' miRNA: 3'- -CC-GCUGGA--GCGGUCaCUG-CGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 33535 | 0.67 | 0.582078 |
Target: 5'- cGGUGAUccaCUCGCCGGUcauGAgGCCcGAgCCa -3' miRNA: 3'- -CCGCUG---GAGCGGUCA---CUgCGGuCU-GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 68888 | 0.67 | 0.582078 |
Target: 5'- cGCGGCCgaCGCCAucgaGGCGCU-GACCa -3' miRNA: 3'- cCGCUGGa-GCGGUca--CUGCGGuCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 16366 | 0.68 | 0.561469 |
Target: 5'- uGGCGACgagggCGCCaAGUGGguUGCCucGGCCa -3' miRNA: 3'- -CCGCUGga---GCGG-UCACU--GCGGu-CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 68517 | 0.68 | 0.561469 |
Target: 5'- cGCGGCa-CGCCuG-GGCGCCAuGCCg -3' miRNA: 3'- cCGCUGgaGCGGuCaCUGCGGUcUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 10313 | 0.68 | 0.561469 |
Target: 5'- cGGgGAgCCaggGCCAgGUGugGCCGGugCu -3' miRNA: 3'- -CCgCU-GGag-CGGU-CACugCGGUCugG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 6512 | 0.68 | 0.551238 |
Target: 5'- aGGaGugCUgGCCGGUcgcuucGGCGCCGGgGCCu -3' miRNA: 3'- -CCgCugGAgCGGUCA------CUGCGGUC-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 44262 | 0.68 | 0.551238 |
Target: 5'- gGGCGccguaGCaCUCguauucgcgGCCGGUGAgGgCCAGGCCc -3' miRNA: 3'- -CCGC-----UG-GAG---------CGGUCACUgC-GGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 27893 | 0.68 | 0.551238 |
Target: 5'- gGGCGGCaccaaCUCGuCCAGUagcgGcACGCgGGGCCu -3' miRNA: 3'- -CCGCUG-----GAGC-GGUCA----C-UGCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 65214 | 0.68 | 0.547161 |
Target: 5'- uGGCGGCCguacuucagggCGCCuuccaucauUGCCAGGCCg -3' miRNA: 3'- -CCGCUGGa----------GCGGucacu----GCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 46911 | 0.68 | 0.541064 |
Target: 5'- cGGCGACUgguUCGCUggcacuaccuacGGUGAgGCCGccGACUc -3' miRNA: 3'- -CCGCUGG---AGCGG------------UCACUgCGGU--CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 57081 | 0.68 | 0.541064 |
Target: 5'- aGGCGucuGCCUcCGCCAG-GACGgaCUAGugCc -3' miRNA: 3'- -CCGC---UGGA-GCGGUCaCUGC--GGUCugG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 69006 | 0.68 | 0.53499 |
Target: 5'- cGGCGGCCgugacgauggucagCGCCucgaUGGCGUCGG-CCg -3' miRNA: 3'- -CCGCUGGa-------------GCGGuc--ACUGCGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40652 | 0.68 | 0.530954 |
Target: 5'- cGGCGACgCUCgGUgAGUGGCuCCAcucccuGACCg -3' miRNA: 3'- -CCGCUG-GAG-CGgUCACUGcGGU------CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 13875 | 0.68 | 0.520914 |
Target: 5'- aGGCGACUggUCcCCGGaUGAguaCGCaCAGGCCg -3' miRNA: 3'- -CCGCUGG--AGcGGUC-ACU---GCG-GUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 6111 | 0.69 | 0.501063 |
Target: 5'- gGGCGAUgUCGUa---GACGCCgcAGACCu -3' miRNA: 3'- -CCGCUGgAGCGgucaCUGCGG--UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 39792 | 0.69 | 0.501063 |
Target: 5'- cGCGACCaUCGCCucccacgccucGUGGgGCaAGACCg -3' miRNA: 3'- cCGCUGG-AGCGGu----------CACUgCGgUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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