miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 12401 0.76 0.195244
Target:  5'- cGGCGACgCUCGUCGGUGA-GCCGguGACg -3'
miRNA:   3'- -CCGCUG-GAGCGGUCACUgCGGU--CUGg -5'
18294 3' -58.3 NC_004681.1 + 12802 0.67 0.62264
Target:  5'- cGGCGACCgacgcagCugcagcacguacgGCCAuUGGCGCCGGuacguCCa -3'
miRNA:   3'- -CCGCUGGa------G-------------CGGUcACUGCGGUCu----GG- -5'
18294 3' -58.3 NC_004681.1 + 13244 0.66 0.654985
Target:  5'- cGCGACCgccgcgucaagcUCGCCGaauuccGCGuCCAGGCCa -3'
miRNA:   3'- cCGCUGG------------AGCGGUcac---UGC-GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 13447 0.66 0.675772
Target:  5'- cGGCGAgccgaugaaggaCCUCGCgGGcaauccgaUGAC-CCGGAUCg -3'
miRNA:   3'- -CCGCU------------GGAGCGgUC--------ACUGcGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 13594 0.73 0.276144
Target:  5'- gGGCGGCCaCGCCAaUGACGuCCAGcUCg -3'
miRNA:   3'- -CCGCUGGaGCGGUcACUGC-GGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 13875 0.68 0.520914
Target:  5'- aGGCGACUggUCcCCGGaUGAguaCGCaCAGGCCg -3'
miRNA:   3'- -CCGCUGG--AGcGGUC-ACU---GCG-GUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 14983 0.69 0.48834
Target:  5'- cGGCGACCUgcgaggcggggaugUGgaagucgaCCAGggugGugGUCAGACCg -3'
miRNA:   3'- -CCGCUGGA--------------GC--------GGUCa---CugCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 15886 0.67 0.602836
Target:  5'- uGGCGGCCgCGUgGGUcaccgugaaGAuCGCCGuGGCCg -3'
miRNA:   3'- -CCGCUGGaGCGgUCA---------CU-GCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 15993 0.7 0.453001
Target:  5'- cGGCGAUCUUcaCGGUGAcccacgcggcCGCCAGGCUc -3'
miRNA:   3'- -CCGCUGGAGcgGUCACU----------GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 16121 0.7 0.425397
Target:  5'- cGGCGcCCUUGCCAGcagccggGACGaugcCCAGAUa -3'
miRNA:   3'- -CCGCuGGAGCGGUCa------CUGC----GGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 16196 0.73 0.276144
Target:  5'- uGGCGGCUgugcgCGCCgcgguGGUGACGCC--ACCg -3'
miRNA:   3'- -CCGCUGGa----GCGG-----UCACUGCGGucUGG- -5'
18294 3' -58.3 NC_004681.1 + 16366 0.68 0.561469
Target:  5'- uGGCGACgagggCGCCaAGUGGguUGCCucGGCCa -3'
miRNA:   3'- -CCGCUGga---GCGG-UCACU--GCGGu-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 16702 0.67 0.582078
Target:  5'- cGCGGCCugcaguugcaggUCGaCCGGgGACGCCGGGg- -3'
miRNA:   3'- cCGCUGG------------AGC-GGUCaCUGCGGUCUgg -5'
18294 3' -58.3 NC_004681.1 + 17553 0.7 0.415529
Target:  5'- uGGCGGcacccCCUUcaacuggGgCAGUGACGCCGcGGCCa -3'
miRNA:   3'- -CCGCU-----GGAG-------CgGUCACUGCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 17833 0.7 0.425397
Target:  5'- uGGCGACCUCGgUguuGUGcUGCUuGACCg -3'
miRNA:   3'- -CCGCUGGAGCgGu--CACuGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 17938 0.69 0.491263
Target:  5'- gGGCGcCCggGUUGGUGAgGCCGGugCc -3'
miRNA:   3'- -CCGCuGGagCGGUCACUgCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 18209 0.7 0.41642
Target:  5'- cGGUG-CCUgGCCGGgGGCGCCGauGCCg -3'
miRNA:   3'- -CCGCuGGAgCGGUCaCUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 18344 0.75 0.221455
Target:  5'- uGGCGGgCUCGgguucacccCCGGUGGCGCCaucgacauggcAGGCCa -3'
miRNA:   3'- -CCGCUgGAGC---------GGUCACUGCGG-----------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 18540 0.67 0.602836
Target:  5'- uGGCGACCUCcauGCCcuucuggacAGcGAUGCCcGAUCc -3'
miRNA:   3'- -CCGCUGGAG---CGG---------UCaCUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 18833 0.7 0.434487
Target:  5'- cGCGGCCUCGCCGccGuCGCCcuuGGCg -3'
miRNA:   3'- cCGCUGGAGCGGUcaCuGCGGu--CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.