miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 19201 0.75 0.229313
Target:  5'- uGCGaACCUCGCgccggguguccugggUGGUGACGCCGGAUg -3'
miRNA:   3'- cCGC-UGGAGCG---------------GUCACUGCGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 20416 0.67 0.623684
Target:  5'- aGGUuGCCUUGCgGGggcagGAUGCCGaACCa -3'
miRNA:   3'- -CCGcUGGAGCGgUCa----CUGCGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 21317 0.69 0.501063
Target:  5'- aGGCGACCaUCGUCGugGACGUgGucGACCg -3'
miRNA:   3'- -CCGCUGG-AGCGGUcaCUGCGgU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 22480 0.66 0.686114
Target:  5'- cGGCGACaaCGCCAccaucaucGGCGCCucGGACg -3'
miRNA:   3'- -CCGCUGgaGCGGUca------CUGCGG--UCUGg -5'
18294 3' -58.3 NC_004681.1 + 22823 0.66 0.644559
Target:  5'- uGGCGGCCgUGCCGGUGuucugggucuguGC-CCAcACCa -3'
miRNA:   3'- -CCGCUGGaGCGGUCAC------------UGcGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 22961 0.7 0.453001
Target:  5'- uGGUGACCUUGgUGGUGGCGCUgucgaacgcggGGAUg -3'
miRNA:   3'- -CCGCUGGAGCgGUCACUGCGG-----------UCUGg -5'
18294 3' -58.3 NC_004681.1 + 24065 0.72 0.325762
Target:  5'- uGGaCG-CCaUUGUCGGUGGCGCCguGGGCCa -3'
miRNA:   3'- -CC-GCuGG-AGCGGUCACUGCGG--UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 24202 0.74 0.250604
Target:  5'- aGGCG-UC-CGCCAGgcUGGCGCCGGAaCCu -3'
miRNA:   3'- -CCGCuGGaGCGGUC--ACUGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 24839 0.67 0.62264
Target:  5'- uGGUGAUCUCccccguuGCCGGUgucgacugcGAUGCC-GACCc -3'
miRNA:   3'- -CCGCUGGAG-------CGGUCA---------CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 24944 0.73 0.282846
Target:  5'- uGGCGGCCgccgcccgCGCCGccGACGCCGaugaggucGACCg -3'
miRNA:   3'- -CCGCUGGa-------GCGGUcaCUGCGGU--------CUGG- -5'
18294 3' -58.3 NC_004681.1 + 25089 0.67 0.623684
Target:  5'- uGCcGCCgaCGCCuGUGcCGCCAGAgCCc -3'
miRNA:   3'- cCGcUGGa-GCGGuCACuGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 25350 0.66 0.69641
Target:  5'- aGCGcACCcaacCGCCGccgcgGGCGCCAuGGCCg -3'
miRNA:   3'- cCGC-UGGa---GCGGUca---CUGCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 25795 0.67 0.634122
Target:  5'- cGGCGAUgUCacguaCAGgccGACGCCuGGCCc -3'
miRNA:   3'- -CCGCUGgAGcg---GUCa--CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 26320 0.66 0.654985
Target:  5'- gGGCGGgCaUCGCCGccGUGGCggGCCAGgACg -3'
miRNA:   3'- -CCGCUgG-AGCGGU--CACUG--CGGUC-UGg -5'
18294 3' -58.3 NC_004681.1 + 27120 0.67 0.610126
Target:  5'- aGGCGACCgCGUaggCGGUGugccauccguagccGCuGCCAGACa -3'
miRNA:   3'- -CCGCUGGaGCG---GUCAC--------------UG-CGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 27693 0.72 0.318286
Target:  5'- gGGUGACCcaggCGCCuGUGGugccUGCCGGuACCg -3'
miRNA:   3'- -CCGCUGGa---GCGGuCACU----GCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 27730 0.71 0.398819
Target:  5'- cGGCGACCagagcCGCCGccGcCGCCAGcGCCa -3'
miRNA:   3'- -CCGCUGGa----GCGGUcaCuGCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 27893 0.68 0.551238
Target:  5'- gGGCGGCaccaaCUCGuCCAGUagcgGcACGCgGGGCCu -3'
miRNA:   3'- -CCGCUG-----GAGC-GGUCA----C-UGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 28053 0.7 0.425397
Target:  5'- aGUGACgCagugaCGCCAGUGAUGCCAcaGCCg -3'
miRNA:   3'- cCGCUG-Ga----GCGGUCACUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 28519 0.73 0.28217
Target:  5'- cGCGAgCUCcaucuccgcgggaGCCggGGUGAcCGCCAGGCCa -3'
miRNA:   3'- cCGCUgGAG-------------CGG--UCACU-GCGGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.