Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18294 | 3' | -58.3 | NC_004681.1 | + | 28841 | 0.74 | 0.256801 |
Target: 5'- uGGCGACaccgUCGUaGGUGAUGCCAGuuacGCCg -3' miRNA: 3'- -CCGCUGg---AGCGgUCACUGCGGUC----UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 29147 | 0.69 | 0.481552 |
Target: 5'- uGGCGACCUCaaCGGccACGUCAacGACCa -3' miRNA: 3'- -CCGCUGGAGcgGUCacUGCGGU--CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 29518 | 1.14 | 0.000388 |
Target: 5'- aGGCGACCUCGCCAGUGACGCCAGACCa -3' miRNA: 3'- -CCGCUGGAGCGGUCACUGCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 29765 | 0.66 | 0.686114 |
Target: 5'- cGCGACCUgcUGCCAGgugcaGCCAG-CUu -3' miRNA: 3'- cCGCUGGA--GCGGUCacug-CGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 30255 | 0.7 | 0.434487 |
Target: 5'- cGGCGGCg--GCCGGUacGGCGUCgAGACCa -3' miRNA: 3'- -CCGCUGgagCGGUCA--CUGCGG-UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 30525 | 0.71 | 0.373329 |
Target: 5'- -aCGGCCgguaccaGCCGG-GACGCCAGuCCg -3' miRNA: 3'- ccGCUGGag-----CGGUCaCUGCGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 31239 | 0.66 | 0.695383 |
Target: 5'- gGGgGACCggCGCCgAGUGuuuggcuacggcaACGUCggAGACCu -3' miRNA: 3'- -CCgCUGGa-GCGG-UCAC-------------UGCGG--UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 32134 | 0.71 | 0.365082 |
Target: 5'- cGGCGGCCcaCGCCAacGACcaGCUGGACCg -3' miRNA: 3'- -CCGCUGGa-GCGGUcaCUG--CGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 32208 | 0.73 | 0.296634 |
Target: 5'- cGGUGACCgcuuccuggaUGCCGGUGACGaCCuugucGGCCg -3' miRNA: 3'- -CCGCUGGa---------GCGGUCACUGC-GGu----CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 32780 | 0.66 | 0.654985 |
Target: 5'- cGCGACgUCGgCGGgguAC-CCGGACCa -3' miRNA: 3'- cCGCUGgAGCgGUCac-UGcGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 33535 | 0.67 | 0.582078 |
Target: 5'- cGGUGAUccaCUCGCCGGUcauGAgGCCcGAgCCa -3' miRNA: 3'- -CCGCUG---GAGCGGUCA---CUgCGGuCU-GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 36744 | 0.66 | 0.653943 |
Target: 5'- --gGACCccacuuUCGCCAG-GAuuaccagcgcgucUGCCAGGCCg -3' miRNA: 3'- ccgCUGG------AGCGGUCaCU-------------GCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 38982 | 0.77 | 0.167407 |
Target: 5'- aGGCuGGCCUUcuCCAGUGGCGCCAGcucuCCu -3' miRNA: 3'- -CCG-CUGGAGc-GGUCACUGCGGUCu---GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 39337 | 0.67 | 0.602836 |
Target: 5'- uGGCGcCCUUGCCgcggcgcacGGUGAgcugacaguCGaCCAGGCUg -3' miRNA: 3'- -CCGCuGGAGCGG---------UCACU---------GC-GGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 39632 | 0.67 | 0.582078 |
Target: 5'- cGGuCGAUCUgaCGCCGG-GAUuGCCAGcCCg -3' miRNA: 3'- -CC-GCUGGA--GCGGUCaCUG-CGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 39792 | 0.69 | 0.501063 |
Target: 5'- cGCGACCaUCGCCucccacgccucGUGGgGCaAGACCg -3' miRNA: 3'- cCGCUGG-AGCGGu----------CACUgCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40131 | 0.66 | 0.654985 |
Target: 5'- cGGUGACCgC-CCGG-GACaGgCAGGCCg -3' miRNA: 3'- -CCGCUGGaGcGGUCaCUG-CgGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40385 | 0.71 | 0.373329 |
Target: 5'- aGCGGCaC-CGCCAGcGugGCCGGugUc -3' miRNA: 3'- cCGCUG-GaGCGGUCaCugCGGUCugG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40652 | 0.68 | 0.530954 |
Target: 5'- cGGCGACgCUCgGUgAGUGGCuCCAcucccuGACCg -3' miRNA: 3'- -CCGCUG-GAG-CGgUCACUGcGGU------CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 41999 | 0.75 | 0.227044 |
Target: 5'- gGGCGAUCUCgGCCAGccuugucGACGCCA-ACCu -3' miRNA: 3'- -CCGCUGGAG-CGGUCa------CUGCGGUcUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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