miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 44219 0.67 0.602836
Target:  5'- cGCGGCCUCGggGGUGAgGCaGGugCc -3'
miRNA:   3'- cCGCUGGAGCggUCACUgCGgUCugG- -5'
18294 3' -58.3 NC_004681.1 + 44262 0.68 0.551238
Target:  5'- gGGCGccguaGCaCUCguauucgcgGCCGGUGAgGgCCAGGCCc -3'
miRNA:   3'- -CCGC-----UG-GAG---------CGGUCACUgC-GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 46911 0.68 0.541064
Target:  5'- cGGCGACUgguUCGCUggcacuaccuacGGUGAgGCCGccGACUc -3'
miRNA:   3'- -CCGCUGG---AGCGG------------UCACUgCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 47026 0.7 0.41642
Target:  5'- cGGCGGCCUCaccguagguaguGCCAGcGAaccaguccCGCgAGGCCc -3'
miRNA:   3'- -CCGCUGGAG------------CGGUCaCU--------GCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 47732 0.69 0.501063
Target:  5'- aGGaCGACaUCGCCAGUGcAUucacugGCCAGAUg -3'
miRNA:   3'- -CC-GCUGgAGCGGUCAC-UG------CGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 48228 0.67 0.582078
Target:  5'- uGGC--CCUCGCCgAGgcuCGCCAGuCCg -3'
miRNA:   3'- -CCGcuGGAGCGG-UCacuGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 50380 0.67 0.602836
Target:  5'- cGGgGACgUgGCCcuucuugcGGUgGGCGCgGGACCa -3'
miRNA:   3'- -CCgCUGgAgCGG--------UCA-CUGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 51295 0.66 0.665392
Target:  5'- -cCGACCUCuacaugGCCGGUGAgucCGCC-GACg -3'
miRNA:   3'- ccGCUGGAG------CGGUCACU---GCGGuCUGg -5'
18294 3' -58.3 NC_004681.1 + 51488 0.7 0.45113
Target:  5'- gGGCGACCgcugcCGCCAGcucggcuacaccGACGCCAccACCu -3'
miRNA:   3'- -CCGCUGGa----GCGGUCa-----------CUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 51849 0.67 0.613253
Target:  5'- cGGCGuuacucuuGCCcgCGCCGGggcgGcCGCCGacGACCa -3'
miRNA:   3'- -CCGC--------UGGa-GCGGUCa---CuGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 51876 0.69 0.481552
Target:  5'- cGGCGGCCUUGgaGaUGAUGUuCAGACCg -3'
miRNA:   3'- -CCGCUGGAGCggUcACUGCG-GUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 52244 0.67 0.634122
Target:  5'- ---aACCUgGCCGGUGGCGaCUcucuGGGCCg -3'
miRNA:   3'- ccgcUGGAgCGGUCACUGC-GG----UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 53642 0.74 0.272184
Target:  5'- cGGCGcCCUgGUCGGUGucgucauccacaagcGCGCCGGAaCCa -3'
miRNA:   3'- -CCGCuGGAgCGGUCAC---------------UGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 53671 0.66 0.665392
Target:  5'- uGGagGACCUUGCCGGUGGCGaCGuuCUu -3'
miRNA:   3'- -CCg-CUGGAGCGGUCACUGCgGUcuGG- -5'
18294 3' -58.3 NC_004681.1 + 55959 0.66 0.686114
Target:  5'- uGGaCaACCUCGUCGG-GGUGCCGGugCu -3'
miRNA:   3'- -CC-GcUGGAGCGGUCaCUGCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 57081 0.68 0.541064
Target:  5'- aGGCGucuGCCUcCGCCAG-GACGgaCUAGugCc -3'
miRNA:   3'- -CCGC---UGGA-GCGGUCaCUGC--GGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 58881 0.69 0.481552
Target:  5'- gGGCGcgcGCCUCGaCGGUG-CGCguGACa -3'
miRNA:   3'- -CCGC---UGGAGCgGUCACuGCGguCUGg -5'
18294 3' -58.3 NC_004681.1 + 59003 0.66 0.663313
Target:  5'- --aGACCUCGUgGGggagGGCGCCcaccgcgaauuuGACCa -3'
miRNA:   3'- ccgCUGGAGCGgUCa---CUGCGGu-----------CUGG- -5'
18294 3' -58.3 NC_004681.1 + 59775 0.69 0.501063
Target:  5'- aGUG-CCUCGcCCAGUGcuCGCUGGACg -3'
miRNA:   3'- cCGCuGGAGC-GGUCACu-GCGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 60685 0.66 0.654985
Target:  5'- cGGCGGCCUCGUCGagcaccacGUu-CGUCGG-CCa -3'
miRNA:   3'- -CCGCUGGAGCGGU--------CAcuGCGGUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.