Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18294 | 3' | -58.3 | NC_004681.1 | + | 53642 | 0.74 | 0.272184 |
Target: 5'- cGGCGcCCUgGUCGGUGucgucauccacaagcGCGCCGGAaCCa -3' miRNA: 3'- -CCGCuGGAgCGGUCAC---------------UGCGGUCU-GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 52244 | 0.67 | 0.634122 |
Target: 5'- ---aACCUgGCCGGUGGCGaCUcucuGGGCCg -3' miRNA: 3'- ccgcUGGAgCGGUCACUGC-GG----UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 51876 | 0.69 | 0.481552 |
Target: 5'- cGGCGGCCUUGgaGaUGAUGUuCAGACCg -3' miRNA: 3'- -CCGCUGGAGCggUcACUGCG-GUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 51849 | 0.67 | 0.613253 |
Target: 5'- cGGCGuuacucuuGCCcgCGCCGGggcgGcCGCCGacGACCa -3' miRNA: 3'- -CCGC--------UGGa-GCGGUCa---CuGCGGU--CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 51488 | 0.7 | 0.45113 |
Target: 5'- gGGCGACCgcugcCGCCAGcucggcuacaccGACGCCAccACCu -3' miRNA: 3'- -CCGCUGGa----GCGGUCa-----------CUGCGGUc-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 51295 | 0.66 | 0.665392 |
Target: 5'- -cCGACCUCuacaugGCCGGUGAgucCGCC-GACg -3' miRNA: 3'- ccGCUGGAG------CGGUCACU---GCGGuCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 50380 | 0.67 | 0.602836 |
Target: 5'- cGGgGACgUgGCCcuucuugcGGUgGGCGCgGGACCa -3' miRNA: 3'- -CCgCUGgAgCGG--------UCA-CUGCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 48228 | 0.67 | 0.582078 |
Target: 5'- uGGC--CCUCGCCgAGgcuCGCCAGuCCg -3' miRNA: 3'- -CCGcuGGAGCGG-UCacuGCGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 47732 | 0.69 | 0.501063 |
Target: 5'- aGGaCGACaUCGCCAGUGcAUucacugGCCAGAUg -3' miRNA: 3'- -CC-GCUGgAGCGGUCAC-UG------CGGUCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 47026 | 0.7 | 0.41642 |
Target: 5'- cGGCGGCCUCaccguagguaguGCCAGcGAaccaguccCGCgAGGCCc -3' miRNA: 3'- -CCGCUGGAG------------CGGUCaCU--------GCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 46911 | 0.68 | 0.541064 |
Target: 5'- cGGCGACUgguUCGCUggcacuaccuacGGUGAgGCCGccGACUc -3' miRNA: 3'- -CCGCUGG---AGCGG------------UCACUgCGGU--CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 44262 | 0.68 | 0.551238 |
Target: 5'- gGGCGccguaGCaCUCguauucgcgGCCGGUGAgGgCCAGGCCc -3' miRNA: 3'- -CCGC-----UG-GAG---------CGGUCACUgC-GGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 44219 | 0.67 | 0.602836 |
Target: 5'- cGCGGCCUCGggGGUGAgGCaGGugCc -3' miRNA: 3'- cCGCUGGAGCggUCACUgCGgUCugG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 41999 | 0.75 | 0.227044 |
Target: 5'- gGGCGAUCUCgGCCAGccuugucGACGCCA-ACCu -3' miRNA: 3'- -CCGCUGGAG-CGGUCa------CUGCGGUcUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40652 | 0.68 | 0.530954 |
Target: 5'- cGGCGACgCUCgGUgAGUGGCuCCAcucccuGACCg -3' miRNA: 3'- -CCGCUG-GAG-CGgUCACUGcGGU------CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40385 | 0.71 | 0.373329 |
Target: 5'- aGCGGCaC-CGCCAGcGugGCCGGugUc -3' miRNA: 3'- cCGCUG-GaGCGGUCaCugCGGUCugG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40131 | 0.66 | 0.654985 |
Target: 5'- cGGUGACCgC-CCGG-GACaGgCAGGCCg -3' miRNA: 3'- -CCGCUGGaGcGGUCaCUG-CgGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 39792 | 0.69 | 0.501063 |
Target: 5'- cGCGACCaUCGCCucccacgccucGUGGgGCaAGACCg -3' miRNA: 3'- cCGCUGG-AGCGGu----------CACUgCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 39632 | 0.67 | 0.582078 |
Target: 5'- cGGuCGAUCUgaCGCCGG-GAUuGCCAGcCCg -3' miRNA: 3'- -CC-GCUGGA--GCGGUCaCUG-CGGUCuGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 39337 | 0.67 | 0.602836 |
Target: 5'- uGGCGcCCUUGCCgcggcgcacGGUGAgcugacaguCGaCCAGGCUg -3' miRNA: 3'- -CCGCuGGAGCGG---------UCACU---------GC-GGUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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