miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 38982 0.77 0.167407
Target:  5'- aGGCuGGCCUUcuCCAGUGGCGCCAGcucuCCu -3'
miRNA:   3'- -CCG-CUGGAGc-GGUCACUGCGGUCu---GG- -5'
18294 3' -58.3 NC_004681.1 + 36744 0.66 0.653943
Target:  5'- --gGACCccacuuUCGCCAG-GAuuaccagcgcgucUGCCAGGCCg -3'
miRNA:   3'- ccgCUGG------AGCGGUCaCU-------------GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 33535 0.67 0.582078
Target:  5'- cGGUGAUccaCUCGCCGGUcauGAgGCCcGAgCCa -3'
miRNA:   3'- -CCGCUG---GAGCGGUCA---CUgCGGuCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 32780 0.66 0.654985
Target:  5'- cGCGACgUCGgCGGgguAC-CCGGACCa -3'
miRNA:   3'- cCGCUGgAGCgGUCac-UGcGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 32208 0.73 0.296634
Target:  5'- cGGUGACCgcuuccuggaUGCCGGUGACGaCCuugucGGCCg -3'
miRNA:   3'- -CCGCUGGa---------GCGGUCACUGC-GGu----CUGG- -5'
18294 3' -58.3 NC_004681.1 + 32134 0.71 0.365082
Target:  5'- cGGCGGCCcaCGCCAacGACcaGCUGGACCg -3'
miRNA:   3'- -CCGCUGGa-GCGGUcaCUG--CGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 31239 0.66 0.695383
Target:  5'- gGGgGACCggCGCCgAGUGuuuggcuacggcaACGUCggAGACCu -3'
miRNA:   3'- -CCgCUGGa-GCGG-UCAC-------------UGCGG--UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 30525 0.71 0.373329
Target:  5'- -aCGGCCgguaccaGCCGG-GACGCCAGuCCg -3'
miRNA:   3'- ccGCUGGag-----CGGUCaCUGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 30255 0.7 0.434487
Target:  5'- cGGCGGCg--GCCGGUacGGCGUCgAGACCa -3'
miRNA:   3'- -CCGCUGgagCGGUCA--CUGCGG-UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 29765 0.66 0.686114
Target:  5'- cGCGACCUgcUGCCAGgugcaGCCAG-CUu -3'
miRNA:   3'- cCGCUGGA--GCGGUCacug-CGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 29518 1.14 0.000388
Target:  5'- aGGCGACCUCGCCAGUGACGCCAGACCa -3'
miRNA:   3'- -CCGCUGGAGCGGUCACUGCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 29147 0.69 0.481552
Target:  5'- uGGCGACCUCaaCGGccACGUCAacGACCa -3'
miRNA:   3'- -CCGCUGGAGcgGUCacUGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 28841 0.74 0.256801
Target:  5'- uGGCGACaccgUCGUaGGUGAUGCCAGuuacGCCg -3'
miRNA:   3'- -CCGCUGg---AGCGgUCACUGCGGUC----UGG- -5'
18294 3' -58.3 NC_004681.1 + 28519 0.73 0.28217
Target:  5'- cGCGAgCUCcaucuccgcgggaGCCggGGUGAcCGCCAGGCCa -3'
miRNA:   3'- cCGCUgGAG-------------CGG--UCACU-GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 28053 0.7 0.425397
Target:  5'- aGUGACgCagugaCGCCAGUGAUGCCAcaGCCg -3'
miRNA:   3'- cCGCUG-Ga----GCGGUCACUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 27893 0.68 0.551238
Target:  5'- gGGCGGCaccaaCUCGuCCAGUagcgGcACGCgGGGCCu -3'
miRNA:   3'- -CCGCUG-----GAGC-GGUCA----C-UGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 27730 0.71 0.398819
Target:  5'- cGGCGACCagagcCGCCGccGcCGCCAGcGCCa -3'
miRNA:   3'- -CCGCUGGa----GCGGUcaCuGCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 27693 0.72 0.318286
Target:  5'- gGGUGACCcaggCGCCuGUGGugccUGCCGGuACCg -3'
miRNA:   3'- -CCGCUGGa---GCGGuCACU----GCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 27120 0.67 0.610126
Target:  5'- aGGCGACCgCGUaggCGGUGugccauccguagccGCuGCCAGACa -3'
miRNA:   3'- -CCGCUGGaGCG---GUCAC--------------UG-CGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 26320 0.66 0.654985
Target:  5'- gGGCGGgCaUCGCCGccGUGGCggGCCAGgACg -3'
miRNA:   3'- -CCGCUgG-AGCGGU--CACUG--CGGUC-UGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.