miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 25795 0.67 0.634122
Target:  5'- cGGCGAUgUCacguaCAGgccGACGCCuGGCCc -3'
miRNA:   3'- -CCGCUGgAGcg---GUCa--CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 25350 0.66 0.69641
Target:  5'- aGCGcACCcaacCGCCGccgcgGGCGCCAuGGCCg -3'
miRNA:   3'- cCGC-UGGa---GCGGUca---CUGCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 25089 0.67 0.623684
Target:  5'- uGCcGCCgaCGCCuGUGcCGCCAGAgCCc -3'
miRNA:   3'- cCGcUGGa-GCGGuCACuGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 24944 0.73 0.282846
Target:  5'- uGGCGGCCgccgcccgCGCCGccGACGCCGaugaggucGACCg -3'
miRNA:   3'- -CCGCUGGa-------GCGGUcaCUGCGGU--------CUGG- -5'
18294 3' -58.3 NC_004681.1 + 24839 0.67 0.62264
Target:  5'- uGGUGAUCUCccccguuGCCGGUgucgacugcGAUGCC-GACCc -3'
miRNA:   3'- -CCGCUGGAG-------CGGUCA---------CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 24202 0.74 0.250604
Target:  5'- aGGCG-UC-CGCCAGgcUGGCGCCGGAaCCu -3'
miRNA:   3'- -CCGCuGGaGCGGUC--ACUGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 24065 0.72 0.325762
Target:  5'- uGGaCG-CCaUUGUCGGUGGCGCCguGGGCCa -3'
miRNA:   3'- -CC-GCuGG-AGCGGUCACUGCGG--UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 22961 0.7 0.453001
Target:  5'- uGGUGACCUUGgUGGUGGCGCUgucgaacgcggGGAUg -3'
miRNA:   3'- -CCGCUGGAGCgGUCACUGCGG-----------UCUGg -5'
18294 3' -58.3 NC_004681.1 + 22823 0.66 0.644559
Target:  5'- uGGCGGCCgUGCCGGUGuucugggucuguGC-CCAcACCa -3'
miRNA:   3'- -CCGCUGGaGCGGUCAC------------UGcGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 22480 0.66 0.686114
Target:  5'- cGGCGACaaCGCCAccaucaucGGCGCCucGGACg -3'
miRNA:   3'- -CCGCUGgaGCGGUca------CUGCGG--UCUGg -5'
18294 3' -58.3 NC_004681.1 + 21317 0.69 0.501063
Target:  5'- aGGCGACCaUCGUCGugGACGUgGucGACCg -3'
miRNA:   3'- -CCGCUGG-AGCGGUcaCUGCGgU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 20416 0.67 0.623684
Target:  5'- aGGUuGCCUUGCgGGggcagGAUGCCGaACCa -3'
miRNA:   3'- -CCGcUGGAGCGgUCa----CUGCGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 19201 0.75 0.229313
Target:  5'- uGCGaACCUCGCgccggguguccugggUGGUGACGCCGGAUg -3'
miRNA:   3'- cCGC-UGGAGCG---------------GUCACUGCGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 18833 0.7 0.434487
Target:  5'- cGCGGCCUCGCCGccGuCGCCcuuGGCg -3'
miRNA:   3'- cCGCUGGAGCGGUcaCuGCGGu--CUGg -5'
18294 3' -58.3 NC_004681.1 + 18540 0.67 0.602836
Target:  5'- uGGCGACCUCcauGCCcuucuggacAGcGAUGCCcGAUCc -3'
miRNA:   3'- -CCGCUGGAG---CGG---------UCaCUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 18344 0.75 0.221455
Target:  5'- uGGCGGgCUCGgguucacccCCGGUGGCGCCaucgacauggcAGGCCa -3'
miRNA:   3'- -CCGCUgGAGC---------GGUCACUGCGG-----------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 18209 0.7 0.41642
Target:  5'- cGGUG-CCUgGCCGGgGGCGCCGauGCCg -3'
miRNA:   3'- -CCGCuGGAgCGGUCaCUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 17938 0.69 0.491263
Target:  5'- gGGCGcCCggGUUGGUGAgGCCGGugCc -3'
miRNA:   3'- -CCGCuGGagCGGUCACUgCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 17833 0.7 0.425397
Target:  5'- uGGCGACCUCGgUguuGUGcUGCUuGACCg -3'
miRNA:   3'- -CCGCUGGAGCgGu--CACuGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 17553 0.7 0.415529
Target:  5'- uGGCGGcacccCCUUcaacuggGgCAGUGACGCCGcGGCCa -3'
miRNA:   3'- -CCGCU-----GGAG-------CgGUCACUGCGGU-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.