miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 47732 0.69 0.501063
Target:  5'- aGGaCGACaUCGCCAGUGcAUucacugGCCAGAUg -3'
miRNA:   3'- -CC-GCUGgAGCGGUCAC-UG------CGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 30525 0.71 0.373329
Target:  5'- -aCGGCCgguaccaGCCGG-GACGCCAGuCCg -3'
miRNA:   3'- ccGCUGGag-----CGGUCaCUGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 40385 0.71 0.373329
Target:  5'- aGCGGCaC-CGCCAGcGugGCCGGugUc -3'
miRNA:   3'- cCGCUG-GaGCGGUCaCugCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 17553 0.7 0.415529
Target:  5'- uGGCGGcacccCCUUcaacuggGgCAGUGACGCCGcGGCCa -3'
miRNA:   3'- -CCGCU-----GGAG-------CgGUCACUGCGGU-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 30255 0.7 0.434487
Target:  5'- cGGCGGCg--GCCGGUacGGCGUCgAGACCa -3'
miRNA:   3'- -CCGCUGgagCGGUCA--CUGCGG-UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 451 0.7 0.44369
Target:  5'- gGGCGuccaACCUgGCCgAGUucguggggaGGCGCCuGGCCg -3'
miRNA:   3'- -CCGC----UGGAgCGG-UCA---------CUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 51488 0.7 0.45113
Target:  5'- gGGCGACCgcugcCGCCAGcucggcuacaccGACGCCAccACCu -3'
miRNA:   3'- -CCGCUGGa----GCGGUCa-----------CUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 61890 0.69 0.481552
Target:  5'- aGGCGuGCCUCaaCCAGuUGGCGCUguggcaccgcgaGGACCc -3'
miRNA:   3'- -CCGC-UGGAGc-GGUC-ACUGCGG------------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 29147 0.69 0.481552
Target:  5'- uGGCGACCUCaaCGGccACGUCAacGACCa -3'
miRNA:   3'- -CCGCUGGAGcgGUCacUGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 32134 0.71 0.365082
Target:  5'- cGGCGGCCcaCGCCAacGACcaGCUGGACCg -3'
miRNA:   3'- -CCGCUGGa-GCGGUcaCUG--CGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 61639 0.72 0.348969
Target:  5'- aGGCGACCaUCGCCaAGcuGCGCgCAGaaGCCg -3'
miRNA:   3'- -CCGCUGG-AGCGG-UCacUGCG-GUC--UGG- -5'
18294 3' -58.3 NC_004681.1 + 24065 0.72 0.325762
Target:  5'- uGGaCG-CCaUUGUCGGUGGCGCCguGGGCCa -3'
miRNA:   3'- -CC-GCuGG-AGCGGUCACUGCGG--UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 12401 0.76 0.195244
Target:  5'- cGGCGACgCUCGUCGGUGA-GCCGguGACg -3'
miRNA:   3'- -CCGCUG-GAGCGGUCACUgCGGU--CUGg -5'
18294 3' -58.3 NC_004681.1 + 18344 0.75 0.221455
Target:  5'- uGGCGGgCUCGgguucacccCCGGUGGCGCCaucgacauggcAGGCCa -3'
miRNA:   3'- -CCGCUgGAGC---------GGUCACUGCGG-----------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 68735 0.75 0.227044
Target:  5'- uGGC-ACCgcggugUGUCAGUGgcACGCCAGGCCg -3'
miRNA:   3'- -CCGcUGGa-----GCGGUCAC--UGCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 41999 0.75 0.227044
Target:  5'- gGGCGAUCUCgGCCAGccuugucGACGCCA-ACCu -3'
miRNA:   3'- -CCGCUGGAG-CGGUCa------CUGCGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 7211 0.74 0.237993
Target:  5'- aGGCGGCCggUGCCGGUaacGGCGacaccgcgcuucuCCAGGCCa -3'
miRNA:   3'- -CCGCUGGa-GCGGUCA---CUGC-------------GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 53642 0.74 0.272184
Target:  5'- cGGCGcCCUgGUCGGUGucgucauccacaagcGCGCCGGAaCCa -3'
miRNA:   3'- -CCGCuGGAgCGGUCAC---------------UGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 13594 0.73 0.276144
Target:  5'- gGGCGGCCaCGCCAaUGACGuCCAGcUCg -3'
miRNA:   3'- -CCGCUGGaGCGGUcACUGC-GGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 69538 0.73 0.289676
Target:  5'- cGGCGGCCgUGCCccgacugcaAGUGACGUgaaaAGGCCg -3'
miRNA:   3'- -CCGCUGGaGCGG---------UCACUGCGg---UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.