miRNA display CGI


Results 81 - 100 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 3281 0.73 0.282846
Target:  5'- aGGCGugUUCGgcCCAGUGAUGaCC-GACCc -3'
miRNA:   3'- -CCGCugGAGC--GGUCACUGC-GGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 28519 0.73 0.28217
Target:  5'- cGCGAgCUCcaucuccgcgggaGCCggGGUGAcCGCCAGGCCa -3'
miRNA:   3'- cCGCUgGAG-------------CGG--UCACU-GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 16196 0.73 0.276144
Target:  5'- uGGCGGCUgugcgCGCCgcgguGGUGACGCC--ACCg -3'
miRNA:   3'- -CCGCUGGa----GCGG-----UCACUGCGGucUGG- -5'
18294 3' -58.3 NC_004681.1 + 28841 0.74 0.256801
Target:  5'- uGGCGACaccgUCGUaGGUGAUGCCAGuuacGCCg -3'
miRNA:   3'- -CCGCUGg---AGCGgUCACUGCGGUC----UGG- -5'
18294 3' -58.3 NC_004681.1 + 24202 0.74 0.250604
Target:  5'- aGGCG-UC-CGCCAGgcUGGCGCCGGAaCCu -3'
miRNA:   3'- -CCGCuGGaGCGGUC--ACUGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 19201 0.75 0.229313
Target:  5'- uGCGaACCUCGCgccggguguccugggUGGUGACGCCGGAUg -3'
miRNA:   3'- cCGC-UGGAGCG---------------GUCACUGCGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 38982 0.77 0.167407
Target:  5'- aGGCuGGCCUUcuCCAGUGGCGCCAGcucuCCu -3'
miRNA:   3'- -CCG-CUGGAGc-GGUCACUGCGGUCu---GG- -5'
18294 3' -58.3 NC_004681.1 + 64497 0.71 0.365082
Target:  5'- uGGCGaauGCCUCGUaCAGgacGAUGCCGGugGCCa -3'
miRNA:   3'- -CCGC---UGGAGCG-GUCa--CUGCGGUC--UGG- -5'
18294 3' -58.3 NC_004681.1 + 562 0.71 0.398819
Target:  5'- aGGCG-CCUCcccacgaacucgGCCAGguugGACGCCcagcggAGGCCc -3'
miRNA:   3'- -CCGCuGGAG------------CGGUCa---CUGCGG------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 58881 0.69 0.481552
Target:  5'- gGGCGcgcGCCUCGaCGGUG-CGCguGACa -3'
miRNA:   3'- -CCGC---UGGAGCgGUCACuGCGguCUGg -5'
18294 3' -58.3 NC_004681.1 + 15993 0.7 0.453001
Target:  5'- cGGCGAUCUUcaCGGUGAcccacgcggcCGCCAGGCUc -3'
miRNA:   3'- -CCGCUGGAGcgGUCACU----------GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 22961 0.7 0.453001
Target:  5'- uGGUGACCUUGgUGGUGGCGCUgucgaacgcggGGAUg -3'
miRNA:   3'- -CCGCUGGAGCgGUCACUGCGG-----------UCUGg -5'
18294 3' -58.3 NC_004681.1 + 12364 0.7 0.434487
Target:  5'- gGGCGACCUCGggAGUcGGCcacagcaCCGGGCCa -3'
miRNA:   3'- -CCGCUGGAGCggUCA-CUGc------GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 18833 0.7 0.434487
Target:  5'- cGCGGCCUCGCCGccGuCGCCcuuGGCg -3'
miRNA:   3'- cCGCUGGAGCGGUcaCuGCGGu--CUGg -5'
18294 3' -58.3 NC_004681.1 + 16121 0.7 0.425397
Target:  5'- cGGCGcCCUUGCCAGcagccggGACGaugcCCAGAUa -3'
miRNA:   3'- -CCGCuGGAGCGGUCa------CUGC----GGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 17833 0.7 0.425397
Target:  5'- uGGCGACCUCGgUguuGUGcUGCUuGACCg -3'
miRNA:   3'- -CCGCUGGAGCgGu--CACuGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 28053 0.7 0.425397
Target:  5'- aGUGACgCagugaCGCCAGUGAUGCCAcaGCCg -3'
miRNA:   3'- cCGCUG-Ga----GCGGUCACUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 18209 0.7 0.41642
Target:  5'- cGGUG-CCUgGCCGGgGGCGCCGauGCCg -3'
miRNA:   3'- -CCGCuGGAgCGGUCaCUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 47026 0.7 0.41642
Target:  5'- cGGCGGCCUCaccguagguaguGCCAGcGAaccaguccCGCgAGGCCc -3'
miRNA:   3'- -CCGCUGGAG------------CGGUCaCU--------GCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 27730 0.71 0.398819
Target:  5'- cGGCGACCagagcCGCCGccGcCGCCAGcGCCa -3'
miRNA:   3'- -CCGCUGGa----GCGGUcaCuGCGGUC-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.