miRNA display CGI


Results 101 - 113 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 17938 0.69 0.491263
Target:  5'- gGGCGcCCggGUUGGUGAgGCCGGugCc -3'
miRNA:   3'- -CCGCuGGagCGGUCACUgCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 14983 0.69 0.48834
Target:  5'- cGGCGACCUgcgaggcggggaugUGgaagucgaCCAGggugGugGUCAGACCg -3'
miRNA:   3'- -CCGCUGGA--------------GC--------GGUCa---CugCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 3726 0.69 0.481552
Target:  5'- gGGCGGCCugcuucuugUCGCgGGcGACGCCguagauuucaccGGACUg -3'
miRNA:   3'- -CCGCUGG---------AGCGgUCaCUGCGG------------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 51876 0.69 0.481552
Target:  5'- cGGCGGCCUUGgaGaUGAUGUuCAGACCg -3'
miRNA:   3'- -CCGCUGGAGCggUcACUGCG-GUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 58881 0.69 0.481552
Target:  5'- gGGCGcgcGCCUCGaCGGUG-CGCguGACa -3'
miRNA:   3'- -CCGC---UGGAGCgGUCACuGCGguCUGg -5'
18294 3' -58.3 NC_004681.1 + 15993 0.7 0.453001
Target:  5'- cGGCGAUCUUcaCGGUGAcccacgcggcCGCCAGGCUc -3'
miRNA:   3'- -CCGCUGGAGcgGUCACU----------GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 22961 0.7 0.453001
Target:  5'- uGGUGACCUUGgUGGUGGCGCUgucgaacgcggGGAUg -3'
miRNA:   3'- -CCGCUGGAGCgGUCACUGCGG-----------UCUGg -5'
18294 3' -58.3 NC_004681.1 + 12364 0.7 0.434487
Target:  5'- gGGCGACCUCGggAGUcGGCcacagcaCCGGGCCa -3'
miRNA:   3'- -CCGCUGGAGCggUCA-CUGc------GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 18833 0.7 0.434487
Target:  5'- cGCGGCCUCGCCGccGuCGCCcuuGGCg -3'
miRNA:   3'- cCGCUGGAGCGGUcaCuGCGGu--CUGg -5'
18294 3' -58.3 NC_004681.1 + 16121 0.7 0.425397
Target:  5'- cGGCGcCCUUGCCAGcagccggGACGaugcCCAGAUa -3'
miRNA:   3'- -CCGCuGGAGCGGUCa------CUGC----GGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 17833 0.7 0.425397
Target:  5'- uGGCGACCUCGgUguuGUGcUGCUuGACCg -3'
miRNA:   3'- -CCGCUGGAGCgGu--CACuGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 28053 0.7 0.425397
Target:  5'- aGUGACgCagugaCGCCAGUGAUGCCAcaGCCg -3'
miRNA:   3'- cCGCUG-Ga----GCGGUCACUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 29518 1.14 0.000388
Target:  5'- aGGCGACCUCGCCAGUGACGCCAGACCa -3'
miRNA:   3'- -CCGCUGGAGCGGUCACUGCGGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.