Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18294 | 3' | -58.3 | NC_004681.1 | + | 29518 | 1.14 | 0.000388 |
Target: 5'- aGGCGACCUCGCCAGUGACGCCAGACCa -3' miRNA: 3'- -CCGCUGGAGCGGUCACUGCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 28053 | 0.7 | 0.425397 |
Target: 5'- aGUGACgCagugaCGCCAGUGAUGCCAcaGCCg -3' miRNA: 3'- cCGCUG-Ga----GCGGUCACUGCGGUc-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 16121 | 0.7 | 0.425397 |
Target: 5'- cGGCGcCCUUGCCAGcagccggGACGaugcCCAGAUa -3' miRNA: 3'- -CCGCuGGAGCGGUCa------CUGC----GGUCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 25350 | 0.66 | 0.69641 |
Target: 5'- aGCGcACCcaacCGCCGccgcgGGCGCCAuGGCCg -3' miRNA: 3'- cCGC-UGGa---GCGGUca---CUGCGGU-CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 28841 | 0.74 | 0.256801 |
Target: 5'- uGGCGACaccgUCGUaGGUGAUGCCAGuuacGCCg -3' miRNA: 3'- -CCGCUGg---AGCGgUCACUGCGGUC----UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 16196 | 0.73 | 0.276144 |
Target: 5'- uGGCGGCUgugcgCGCCgcgguGGUGACGCC--ACCg -3' miRNA: 3'- -CCGCUGGa----GCGG-----UCACUGCGGucUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 3281 | 0.73 | 0.282846 |
Target: 5'- aGGCGugUUCGgcCCAGUGAUGaCC-GACCc -3' miRNA: 3'- -CCGCugGAGC--GGUCACUGC-GGuCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 24944 | 0.73 | 0.282846 |
Target: 5'- uGGCGGCCgccgcccgCGCCGccGACGCCGaugaggucGACCg -3' miRNA: 3'- -CCGCUGGa-------GCGGUcaCUGCGGU--------CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 4178 | 0.72 | 0.348969 |
Target: 5'- aGCGACCcagCGCgGGguUGGCGUgGGGCCa -3' miRNA: 3'- cCGCUGGa--GCGgUC--ACUGCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 18209 | 0.7 | 0.41642 |
Target: 5'- cGGUG-CCUgGCCGGgGGCGCCGauGCCg -3' miRNA: 3'- -CCGCuGGAgCGGUCaCUGCGGUc-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 562 | 0.71 | 0.398819 |
Target: 5'- aGGCG-CCUCcccacgaacucgGCCAGguugGACGCCcagcggAGGCCc -3' miRNA: 3'- -CCGCuGGAG------------CGGUCa---CUGCGG------UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 27693 | 0.72 | 0.318286 |
Target: 5'- gGGUGACCcaggCGCCuGUGGugccUGCCGGuACCg -3' miRNA: 3'- -CCGCUGGa---GCGGuCACU----GCGGUC-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 38982 | 0.77 | 0.167407 |
Target: 5'- aGGCuGGCCUUcuCCAGUGGCGCCAGcucuCCu -3' miRNA: 3'- -CCG-CUGGAGc-GGUCACUGCGGUCu---GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 27730 | 0.71 | 0.398819 |
Target: 5'- cGGCGACCagagcCGCCGccGcCGCCAGcGCCa -3' miRNA: 3'- -CCGCUGGa----GCGGUcaCuGCGGUC-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 19201 | 0.75 | 0.229313 |
Target: 5'- uGCGaACCUCGCgccggguguccugggUGGUGACGCCGGAUg -3' miRNA: 3'- cCGC-UGGAGCG---------------GUCACUGCGGUCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 32208 | 0.73 | 0.296634 |
Target: 5'- cGGUGACCgcuuccuggaUGCCGGUGACGaCCuugucGGCCg -3' miRNA: 3'- -CCGCUGGa---------GCGGUCACUGC-GGu----CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 47026 | 0.7 | 0.41642 |
Target: 5'- cGGCGGCCUCaccguagguaguGCCAGcGAaccaguccCGCgAGGCCc -3' miRNA: 3'- -CCGCUGGAG------------CGGUCaCU--------GCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 17833 | 0.7 | 0.425397 |
Target: 5'- uGGCGACCUCGgUguuGUGcUGCUuGACCg -3' miRNA: 3'- -CCGCUGGAGCgGu--CACuGCGGuCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 24202 | 0.74 | 0.250604 |
Target: 5'- aGGCG-UC-CGCCAGgcUGGCGCCGGAaCCu -3' miRNA: 3'- -CCGCuGGaGCGGUC--ACUGCGGUCU-GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 28519 | 0.73 | 0.28217 |
Target: 5'- cGCGAgCUCcaucuccgcgggaGCCggGGUGAcCGCCAGGCCa -3' miRNA: 3'- cCGCUgGAG-------------CGG--UCACU-GCGGUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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