Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18294 | 3' | -58.3 | NC_004681.1 | + | 22961 | 0.7 | 0.453001 |
Target: 5'- uGGUGACCUUGgUGGUGGCGCUgucgaacgcggGGAUg -3' miRNA: 3'- -CCGCUGGAGCgGUCACUGCGG-----------UCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 16121 | 0.7 | 0.425397 |
Target: 5'- cGGCGcCCUUGCCAGcagccggGACGaugcCCAGAUa -3' miRNA: 3'- -CCGCuGGAGCGGUCa------CUGC----GGUCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 27693 | 0.72 | 0.318286 |
Target: 5'- gGGUGACCcaggCGCCuGUGGugccUGCCGGuACCg -3' miRNA: 3'- -CCGCUGGa---GCGGuCACU----GCGGUC-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 24202 | 0.74 | 0.250604 |
Target: 5'- aGGCG-UC-CGCCAGgcUGGCGCCGGAaCCu -3' miRNA: 3'- -CCGCuGGaGCGGUC--ACUGCGGUCU-GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 6512 | 0.68 | 0.551238 |
Target: 5'- aGGaGugCUgGCCGGUcgcuucGGCGCCGGgGCCu -3' miRNA: 3'- -CCgCugGAgCGGUCA------CUGCGGUC-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 14983 | 0.69 | 0.48834 |
Target: 5'- cGGCGACCUgcgaggcggggaugUGgaagucgaCCAGggugGugGUCAGACCg -3' miRNA: 3'- -CCGCUGGA--------------GC--------GGUCa---CugCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 28053 | 0.7 | 0.425397 |
Target: 5'- aGUGACgCagugaCGCCAGUGAUGCCAcaGCCg -3' miRNA: 3'- cCGCUG-Ga----GCGGUCACUGCGGUc-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 19201 | 0.75 | 0.229313 |
Target: 5'- uGCGaACCUCGCgccggguguccugggUGGUGACGCCGGAUg -3' miRNA: 3'- cCGC-UGGAGCG---------------GUCACUGCGGUCUGg -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 3726 | 0.69 | 0.481552 |
Target: 5'- gGGCGGCCugcuucuugUCGCgGGcGACGCCguagauuucaccGGACUg -3' miRNA: 3'- -CCGCUGG---------AGCGgUCaCUGCGG------------UCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 38982 | 0.77 | 0.167407 |
Target: 5'- aGGCuGGCCUUcuCCAGUGGCGCCAGcucuCCu -3' miRNA: 3'- -CCG-CUGGAGc-GGUCACUGCGGUCu---GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 17833 | 0.7 | 0.425397 |
Target: 5'- uGGCGACCUCGgUguuGUGcUGCUuGACCg -3' miRNA: 3'- -CCGCUGGAGCgGu--CACuGCGGuCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 15993 | 0.7 | 0.453001 |
Target: 5'- cGGCGAUCUUcaCGGUGAcccacgcggcCGCCAGGCUc -3' miRNA: 3'- -CCGCUGGAGcgGUCACU----------GCGGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 27730 | 0.71 | 0.398819 |
Target: 5'- cGGCGACCagagcCGCCGccGcCGCCAGcGCCa -3' miRNA: 3'- -CCGCUGGa----GCGGUcaCuGCGGUC-UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 4178 | 0.72 | 0.348969 |
Target: 5'- aGCGACCcagCGCgGGguUGGCGUgGGGCCa -3' miRNA: 3'- cCGCUGGa--GCGgUC--ACUGCGgUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 3281 | 0.73 | 0.282846 |
Target: 5'- aGGCGugUUCGgcCCAGUGAUGaCC-GACCc -3' miRNA: 3'- -CCGCugGAGC--GGUCACUGC-GGuCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 28841 | 0.74 | 0.256801 |
Target: 5'- uGGCGACaccgUCGUaGGUGAUGCCAGuuacGCCg -3' miRNA: 3'- -CCGCUGg---AGCGgUCACUGCGGUC----UGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 33535 | 0.67 | 0.582078 |
Target: 5'- cGGUGAUccaCUCGCCGGUcauGAgGCCcGAgCCa -3' miRNA: 3'- -CCGCUG---GAGCGGUCA---CUgCGGuCU-GG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 44262 | 0.68 | 0.551238 |
Target: 5'- gGGCGccguaGCaCUCguauucgcgGCCGGUGAgGgCCAGGCCc -3' miRNA: 3'- -CCGC-----UG-GAG---------CGGUCACUgC-GGUCUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 40652 | 0.68 | 0.530954 |
Target: 5'- cGGCGACgCUCgGUgAGUGGCuCCAcucccuGACCg -3' miRNA: 3'- -CCGCUG-GAG-CGgUCACUGcGGU------CUGG- -5' |
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18294 | 3' | -58.3 | NC_004681.1 | + | 17938 | 0.69 | 0.491263 |
Target: 5'- gGGCGcCCggGUUGGUGAgGCCGGugCc -3' miRNA: 3'- -CCGCuGGagCGGUCACUgCGGUCugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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