miRNA display CGI


Results 41 - 60 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 27120 0.67 0.610126
Target:  5'- aGGCGACCgCGUaggCGGUGugccauccguagccGCuGCCAGACa -3'
miRNA:   3'- -CCGCUGGaGCG---GUCAC--------------UG-CGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 8877 0.69 0.491263
Target:  5'- uGGCGACCUUGCCGacc-UGCUcguAGACCc -3'
miRNA:   3'- -CCGCUGGAGCGGUcacuGCGG---UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 27730 0.71 0.398819
Target:  5'- cGGCGACCagagcCGCCGccGcCGCCAGcGCCa -3'
miRNA:   3'- -CCGCUGGa----GCGGUcaCuGCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 39337 0.67 0.602836
Target:  5'- uGGCGcCCUUGCCgcggcgcacGGUGAgcugacaguCGaCCAGGCUg -3'
miRNA:   3'- -CCGCuGGAGCGG---------UCACU---------GC-GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 562 0.71 0.398819
Target:  5'- aGGCG-CCUCcccacgaacucgGCCAGguugGACGCCcagcggAGGCCc -3'
miRNA:   3'- -CCGCuGGAG------------CGGUCa---CUGCGG------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 5435 0.66 0.654985
Target:  5'- aGGCGugCcagCGCCuGUGcGCGCUuGGCa -3'
miRNA:   3'- -CCGCugGa--GCGGuCAC-UGCGGuCUGg -5'
18294 3' -58.3 NC_004681.1 + 18209 0.7 0.41642
Target:  5'- cGGUG-CCUgGCCGGgGGCGCCGauGCCg -3'
miRNA:   3'- -CCGCuGGAgCGGUCaCUGCGGUc-UGG- -5'
18294 3' -58.3 NC_004681.1 + 9086 0.66 0.654985
Target:  5'- cGGUGGCCga---GGUGGCGCCgacagcgaggAGGCCg -3'
miRNA:   3'- -CCGCUGGagcggUCACUGCGG----------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 60685 0.66 0.654985
Target:  5'- cGGCGGCCUCGUCGagcaccacGUu-CGUCGG-CCa -3'
miRNA:   3'- -CCGCUGGAGCGGU--------CAcuGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 61851 0.67 0.634122
Target:  5'- uGGCGGCCgCGguCUGGUGGCGCgcgaGGGCg -3'
miRNA:   3'- -CCGCUGGaGC--GGUCACUGCGg---UCUGg -5'
18294 3' -58.3 NC_004681.1 + 25089 0.67 0.623684
Target:  5'- uGCcGCCgaCGCCuGUGcCGCCAGAgCCc -3'
miRNA:   3'- cCGcUGGa-GCGGuCACuGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 62363 0.67 0.623684
Target:  5'- cGGUGAUCUUGCCcccggcgcGGUgGACGa-AGACCu -3'
miRNA:   3'- -CCGCUGGAGCGG--------UCA-CUGCggUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 1533 0.67 0.613253
Target:  5'- -aUGACCcCGCCcGcGGCGCCAauGGCCg -3'
miRNA:   3'- ccGCUGGaGCGGuCaCUGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 18540 0.67 0.602836
Target:  5'- uGGCGACCUCcauGCCcuucuggacAGcGAUGCCcGAUCc -3'
miRNA:   3'- -CCGCUGGAG---CGG---------UCaCUGCGGuCUGG- -5'
18294 3' -58.3 NC_004681.1 + 33535 0.67 0.582078
Target:  5'- cGGUGAUccaCUCGCCGGUcauGAgGCCcGAgCCa -3'
miRNA:   3'- -CCGCUG---GAGCGGUCA---CUgCGGuCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 6512 0.68 0.551238
Target:  5'- aGGaGugCUgGCCGGUcgcuucGGCGCCGGgGCCu -3'
miRNA:   3'- -CCgCugGAgCGGUCA------CUGCGGUC-UGG- -5'
18294 3' -58.3 NC_004681.1 + 40652 0.68 0.530954
Target:  5'- cGGCGACgCUCgGUgAGUGGCuCCAcucccuGACCg -3'
miRNA:   3'- -CCGCUG-GAG-CGgUCACUGcGGU------CUGG- -5'
18294 3' -58.3 NC_004681.1 + 3726 0.69 0.481552
Target:  5'- gGGCGGCCugcuucuugUCGCgGGcGACGCCguagauuucaccGGACUg -3'
miRNA:   3'- -CCGCUGG---------AGCGgUCaCUGCGG------------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 15993 0.7 0.453001
Target:  5'- cGGCGAUCUUcaCGGUGAcccacgcggcCGCCAGGCUc -3'
miRNA:   3'- -CCGCUGGAGcgGUCACU----------GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 16121 0.7 0.425397
Target:  5'- cGGCGcCCUUGCCAGcagccggGACGaugcCCAGAUa -3'
miRNA:   3'- -CCGCuGGAGCGGUCa------CUGC----GGUCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.