miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 27120 0.67 0.610126
Target:  5'- aGGCGACCgCGUaggCGGUGugccauccguagccGCuGCCAGACa -3'
miRNA:   3'- -CCGCUGGaGCG---GUCAC--------------UG-CGGUCUGg -5'
18294 3' -58.3 NC_004681.1 + 1533 0.67 0.613253
Target:  5'- -aUGACCcCGCCcGcGGCGCCAauGGCCg -3'
miRNA:   3'- ccGCUGGaGCGGuCaCUGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 39632 0.67 0.582078
Target:  5'- cGGuCGAUCUgaCGCCGG-GAUuGCCAGcCCg -3'
miRNA:   3'- -CC-GCUGGA--GCGGUCaCUG-CGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 51849 0.67 0.613253
Target:  5'- cGGCGuuacucuuGCCcgCGCCGGggcgGcCGCCGacGACCa -3'
miRNA:   3'- -CCGC--------UGGa-GCGGUCa---CuGCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 46911 0.68 0.541064
Target:  5'- cGGCGACUgguUCGCUggcacuaccuacGGUGAgGCCGccGACUc -3'
miRNA:   3'- -CCGCUGG---AGCGG------------UCACUgCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 53642 0.74 0.272184
Target:  5'- cGGCGcCCUgGUCGGUGucgucauccacaagcGCGCCGGAaCCa -3'
miRNA:   3'- -CCGCuGGAgCGGUCAC---------------UGCGGUCU-GG- -5'
18294 3' -58.3 NC_004681.1 + 18344 0.75 0.221455
Target:  5'- uGGCGGgCUCGgguucacccCCGGUGGCGCCaucgacauggcAGGCCa -3'
miRNA:   3'- -CCGCUgGAGC---------GGUCACUGCGG-----------UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 32134 0.71 0.365082
Target:  5'- cGGCGGCCcaCGCCAacGACcaGCUGGACCg -3'
miRNA:   3'- -CCGCUGGa-GCGGUcaCUG--CGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 30525 0.71 0.373329
Target:  5'- -aCGGCCgguaccaGCCGG-GACGCCAGuCCg -3'
miRNA:   3'- ccGCUGGag-----CGGUCaCUGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 40385 0.71 0.373329
Target:  5'- aGCGGCaC-CGCCAGcGugGCCGGugUc -3'
miRNA:   3'- cCGCUG-GaGCGGUCaCugCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 13875 0.68 0.520914
Target:  5'- aGGCGACUggUCcCCGGaUGAguaCGCaCAGGCCg -3'
miRNA:   3'- -CCGCUGG--AGcGGUC-ACU---GCG-GUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 39792 0.69 0.501063
Target:  5'- cGCGACCaUCGCCucccacgccucGUGGgGCaAGACCg -3'
miRNA:   3'- cCGCUGG-AGCGGu----------CACUgCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 27893 0.68 0.551238
Target:  5'- gGGCGGCaccaaCUCGuCCAGUagcgGcACGCgGGGCCu -3'
miRNA:   3'- -CCGCUG-----GAGC-GGUCA----C-UGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 16366 0.68 0.561469
Target:  5'- uGGCGACgagggCGCCaAGUGGguUGCCucGGCCa -3'
miRNA:   3'- -CCGCUGga---GCGG-UCACU--GCGGu-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 68517 0.68 0.561469
Target:  5'- cGCGGCa-CGCCuG-GGCGCCAuGCCg -3'
miRNA:   3'- cCGCUGgaGCGGuCaCUGCGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 48228 0.67 0.582078
Target:  5'- uGGC--CCUCGCCgAGgcuCGCCAGuCCg -3'
miRNA:   3'- -CCGcuGGAGCGG-UCacuGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 31239 0.66 0.695383
Target:  5'- gGGgGACCggCGCCgAGUGuuuggcuacggcaACGUCggAGACCu -3'
miRNA:   3'- -CCgCUGGa-GCGG-UCAC-------------UGCGG--UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 22480 0.66 0.686114
Target:  5'- cGGCGACaaCGCCAccaucaucGGCGCCucGGACg -3'
miRNA:   3'- -CCGCUGgaGCGGUca------CUGCGG--UCUGg -5'
18294 3' -58.3 NC_004681.1 + 57081 0.68 0.541064
Target:  5'- aGGCGucuGCCUcCGCCAG-GACGgaCUAGugCc -3'
miRNA:   3'- -CCGC---UGGA-GCGGUCaCUGC--GGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 17553 0.7 0.415529
Target:  5'- uGGCGGcacccCCUUcaacuggGgCAGUGACGCCGcGGCCa -3'
miRNA:   3'- -CCGCU-----GGAG-------CgGUCACUGCGGU-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.