miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 3' -58.3 NC_004681.1 + 13244 0.66 0.654985
Target:  5'- cGCGACCgccgcgucaagcUCGCCGaauuccGCGuCCAGGCCa -3'
miRNA:   3'- cCGCUGG------------AGCGGUcac---UGC-GGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 59003 0.66 0.663313
Target:  5'- --aGACCUCGUgGGggagGGCGCCcaccgcgaauuuGACCa -3'
miRNA:   3'- ccgCUGGAGCGgUCa---CUGCGGu-----------CUGG- -5'
18294 3' -58.3 NC_004681.1 + 51295 0.66 0.665392
Target:  5'- -cCGACCUCuacaugGCCGGUGAgucCGCC-GACg -3'
miRNA:   3'- ccGCUGGAG------CGGUCACU---GCGGuCUGg -5'
18294 3' -58.3 NC_004681.1 + 8504 0.66 0.675772
Target:  5'- gGGCGcCUUCGCggaCGGUGAgacCGCCcccgcGGCCa -3'
miRNA:   3'- -CCGCuGGAGCG---GUCACU---GCGGu----CUGG- -5'
18294 3' -58.3 NC_004681.1 + 13447 0.66 0.675772
Target:  5'- cGGCGAgccgaugaaggaCCUCGCgGGcaauccgaUGAC-CCGGAUCg -3'
miRNA:   3'- -CCGCU------------GGAGCGgUC--------ACUGcGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 55959 0.66 0.686114
Target:  5'- uGGaCaACCUCGUCGG-GGUGCCGGugCu -3'
miRNA:   3'- -CC-GcUGGAGCGGUCaCUGCGGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 29765 0.66 0.686114
Target:  5'- cGCGACCUgcUGCCAGgugcaGCCAG-CUu -3'
miRNA:   3'- cCGCUGGA--GCGGUCacug-CGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 22480 0.66 0.686114
Target:  5'- cGGCGACaaCGCCAccaucaucGGCGCCucGGACg -3'
miRNA:   3'- -CCGCUGgaGCGGUca------CUGCGG--UCUGg -5'
18294 3' -58.3 NC_004681.1 + 68465 0.66 0.644559
Target:  5'- aGGCuGACCUCGUC-GUGACGaaguCGaACCu -3'
miRNA:   3'- -CCG-CUGGAGCGGuCACUGCg---GUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 36744 0.66 0.653943
Target:  5'- --gGACCccacuuUCGCCAG-GAuuaccagcgcgucUGCCAGGCCg -3'
miRNA:   3'- ccgCUGG------AGCGGUCaCU-------------GCGGUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 52244 0.67 0.634122
Target:  5'- ---aACCUgGCCGGUGGCGaCUcucuGGGCCg -3'
miRNA:   3'- ccgcUGGAgCGGUCACUGC-GG----UCUGG- -5'
18294 3' -58.3 NC_004681.1 + 39792 0.69 0.501063
Target:  5'- cGCGACCaUCGCCucccacgccucGUGGgGCaAGACCg -3'
miRNA:   3'- cCGCUGG-AGCGGu----------CACUgCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 13875 0.68 0.520914
Target:  5'- aGGCGACUggUCcCCGGaUGAguaCGCaCAGGCCg -3'
miRNA:   3'- -CCGCUGG--AGcGGUC-ACU---GCG-GUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 57081 0.68 0.541064
Target:  5'- aGGCGucuGCCUcCGCCAG-GACGgaCUAGugCc -3'
miRNA:   3'- -CCGC---UGGA-GCGGUCaCUGC--GGUCugG- -5'
18294 3' -58.3 NC_004681.1 + 46911 0.68 0.541064
Target:  5'- cGGCGACUgguUCGCUggcacuaccuacGGUGAgGCCGccGACUc -3'
miRNA:   3'- -CCGCUGG---AGCGG------------UCACUgCGGU--CUGG- -5'
18294 3' -58.3 NC_004681.1 + 27893 0.68 0.551238
Target:  5'- gGGCGGCaccaaCUCGuCCAGUagcgGcACGCgGGGCCu -3'
miRNA:   3'- -CCGCUG-----GAGC-GGUCA----C-UGCGgUCUGG- -5'
18294 3' -58.3 NC_004681.1 + 16366 0.68 0.561469
Target:  5'- uGGCGACgagggCGCCaAGUGGguUGCCucGGCCa -3'
miRNA:   3'- -CCGCUGga---GCGG-UCACU--GCGGu-CUGG- -5'
18294 3' -58.3 NC_004681.1 + 68517 0.68 0.561469
Target:  5'- cGCGGCa-CGCCuG-GGCGCCAuGCCg -3'
miRNA:   3'- cCGCUGgaGCGGuCaCUGCGGUcUGG- -5'
18294 3' -58.3 NC_004681.1 + 48228 0.67 0.582078
Target:  5'- uGGC--CCUCGCCgAGgcuCGCCAGuCCg -3'
miRNA:   3'- -CCGcuGGAGCGG-UCacuGCGGUCuGG- -5'
18294 3' -58.3 NC_004681.1 + 67328 0.67 0.634122
Target:  5'- -uCGACCUgGCC-GUGuCGCaGGGCCu -3'
miRNA:   3'- ccGCUGGAgCGGuCACuGCGgUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.