miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18294 5' -56.2 NC_004681.1 + 39891 0.66 0.73559
Target:  5'- cGAGGCGUgggaggcGAUGgucgcgcGgCGGGCGAGGUc -3'
miRNA:   3'- -CUCCGCGa------CUACaa-----CgGUCUGCUCCA- -5'
18294 5' -56.2 NC_004681.1 + 14492 0.66 0.73559
Target:  5'- aGGGcGCGCUGGUGgccggUGCUGGcGCGAGc- -3'
miRNA:   3'- -CUC-CGCGACUACa----ACGGUC-UGCUCca -5'
18294 5' -56.2 NC_004681.1 + 18399 0.66 0.704107
Target:  5'- aAGGCuGCUGAcc--GCCAGuCGAGGa -3'
miRNA:   3'- cUCCG-CGACUacaaCGGUCuGCUCCa -5'
18294 5' -56.2 NC_004681.1 + 3818 0.67 0.661224
Target:  5'- -uGGCGCUGAUGagauucUUGCCuggcaAGACGGcGGc -3'
miRNA:   3'- cuCCGCGACUAC------AACGG-----UCUGCU-CCa -5'
18294 5' -56.2 NC_004681.1 + 43770 0.67 0.650412
Target:  5'- gGAGGgGUUGAUcGgcggGCUgaaGGGCGAGGUa -3'
miRNA:   3'- -CUCCgCGACUA-Caa--CGG---UCUGCUCCA- -5'
18294 5' -56.2 NC_004681.1 + 50123 0.68 0.617918
Target:  5'- cGAGGCGCUccuUGUagcgcgGCCAGACGGcgcgcgggauGGUg -3'
miRNA:   3'- -CUCCGCGAcu-ACAa-----CGGUCUGCU----------CCA- -5'
18294 5' -56.2 NC_004681.1 + 7114 0.68 0.617918
Target:  5'- -cGGUGCUGAUG-UGCCccucguccACGAGGg -3'
miRNA:   3'- cuCCGCGACUACaACGGuc------UGCUCCa -5'
18294 5' -56.2 NC_004681.1 + 62699 0.69 0.564112
Target:  5'- -cGGCGCcgGAUGagG-CGGACGGGGUg -3'
miRNA:   3'- cuCCGCGa-CUACaaCgGUCUGCUCCA- -5'
18294 5' -56.2 NC_004681.1 + 45799 0.69 0.511621
Target:  5'- -cGGCGCUGGUacucgGCgAGGCGGGGc -3'
miRNA:   3'- cuCCGCGACUAcaa--CGgUCUGCUCCa -5'
18294 5' -56.2 NC_004681.1 + 23438 0.7 0.451503
Target:  5'- cGGGCGcCUGAaGcUGCCGGAaGAGGUg -3'
miRNA:   3'- cUCCGC-GACUaCaACGGUCUgCUCCA- -5'
18294 5' -56.2 NC_004681.1 + 29481 1.07 0.00135
Target:  5'- gGAGGCGCUGAUGUUGCCAGACGAGGUg -3'
miRNA:   3'- -CUCCGCGACUACAACGGUCUGCUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.