miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18297 5' -62.1 NC_004681.1 + 49388 0.66 0.465152
Target:  5'- cGCCuUGCGCGccuCGGUGuaGAGCUCCu- -3'
miRNA:   3'- uCGG-ACGCGCu--GUCGCc-CUCGAGGcu -5'
18297 5' -62.1 NC_004681.1 + 19646 0.66 0.437356
Target:  5'- aAGCCUGgGaCGGCAGCGGca--UCCGu -3'
miRNA:   3'- -UCGGACgC-GCUGUCGCCcucgAGGCu -5'
18297 5' -62.1 NC_004681.1 + 20619 0.66 0.410539
Target:  5'- gGGUCUGCGCGGaggcguGCGuGGAGauuugCCGGg -3'
miRNA:   3'- -UCGGACGCGCUgu----CGC-CCUCga---GGCU- -5'
18297 5' -62.1 NC_004681.1 + 16620 0.67 0.393238
Target:  5'- aGGCC-GCGauggaGGCGGCGGGcaucAGC-CCGGa -3'
miRNA:   3'- -UCGGaCGCg----CUGUCGCCC----UCGaGGCU- -5'
18297 5' -62.1 NC_004681.1 + 33443 0.67 0.360089
Target:  5'- cAGCCaGCGUGAUgugcgGGCGGGuGCcCUGGa -3'
miRNA:   3'- -UCGGaCGCGCUG-----UCGCCCuCGaGGCU- -5'
18297 5' -62.1 NC_004681.1 + 13188 0.67 0.359285
Target:  5'- cGGaaUGCGCuguacuaGACAGCGGcGGCUUCGAg -3'
miRNA:   3'- -UCggACGCG-------CUGUCGCCcUCGAGGCU- -5'
18297 5' -62.1 NC_004681.1 + 32786 0.68 0.352112
Target:  5'- cAGCC-GCGCGACgucGGCGGG-GUacCCGGa -3'
miRNA:   3'- -UCGGaCGCGCUG---UCGCCCuCGa-GGCU- -5'
18297 5' -62.1 NC_004681.1 + 30760 0.68 0.352112
Target:  5'- gAGCUUGacCGCGGCGuccGCGGGAaucucGCUCCa- -3'
miRNA:   3'- -UCGGAC--GCGCUGU---CGCCCU-----CGAGGcu -5'
18297 5' -62.1 NC_004681.1 + 9234 0.68 0.336537
Target:  5'- -aCCcGCGCGAC--UGGGAGCUCCu- -3'
miRNA:   3'- ucGGaCGCGCUGucGCCCUCGAGGcu -5'
18297 5' -62.1 NC_004681.1 + 68578 0.68 0.32147
Target:  5'- cGCCUGgaGCGACAGCGGGccauAG-UCCu- -3'
miRNA:   3'- uCGGACg-CGCUGUCGCCC----UCgAGGcu -5'
18297 5' -62.1 NC_004681.1 + 60299 0.69 0.279327
Target:  5'- uGCa-GCGCGGCAGUGGGAGggUUGGg -3'
miRNA:   3'- uCGgaCGCGCUGUCGCCCUCgaGGCU- -5'
18297 5' -62.1 NC_004681.1 + 33755 0.7 0.259958
Target:  5'- cGGCCgaGCGCGGC--UGGGAGCUuCCGc -3'
miRNA:   3'- -UCGGa-CGCGCUGucGCCCUCGA-GGCu -5'
18297 5' -62.1 NC_004681.1 + 32939 0.7 0.252523
Target:  5'- cGCCUGaaggacuucauCGGCGGCGGGuGCUUCGGc -3'
miRNA:   3'- uCGGACgc---------GCUGUCGCCCuCGAGGCU- -5'
18297 5' -62.1 NC_004681.1 + 39314 0.7 0.247062
Target:  5'- -aCCUGCGCGcGCGGCGccgcgcuGGAcacgGCUCCGAg -3'
miRNA:   3'- ucGGACGCGC-UGUCGC-------CCU----CGAGGCU- -5'
18297 5' -62.1 NC_004681.1 + 17897 0.7 0.241699
Target:  5'- -uCCUGgGCGGCGGCGGcGAgGgUCCGGu -3'
miRNA:   3'- ucGGACgCGCUGUCGCC-CU-CgAGGCU- -5'
18297 5' -62.1 NC_004681.1 + 60143 0.71 0.224521
Target:  5'- cAGCCgGUGCcaGguGCGGGAGCcgCCGAa -3'
miRNA:   3'- -UCGGaCGCGc-UguCGCCCUCGa-GGCU- -5'
18297 5' -62.1 NC_004681.1 + 3836 0.71 0.21903
Target:  5'- uGCCUGgcaagacgGCGGCAuGUGGGAcucGCUCCGAa -3'
miRNA:   3'- uCGGACg-------CGCUGU-CGCCCU---CGAGGCU- -5'
18297 5' -62.1 NC_004681.1 + 7443 0.71 0.213654
Target:  5'- aGGCUUcGcCGCGGCGGCGGGgucAGCcCCGGg -3'
miRNA:   3'- -UCGGA-C-GCGCUGUCGCCC---UCGaGGCU- -5'
18297 5' -62.1 NC_004681.1 + 9083 0.72 0.170205
Target:  5'- uGGCCgaggugGCGcCGACAGCGaGGAGg-CCGAg -3'
miRNA:   3'- -UCGGa-----CGC-GCUGUCGC-CCUCgaGGCU- -5'
18297 5' -62.1 NC_004681.1 + 52117 0.73 0.161688
Target:  5'- gGGCUUGCGCacccGGCAGCGGGAGa-CCa- -3'
miRNA:   3'- -UCGGACGCG----CUGUCGCCCUCgaGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.