miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18298 3' -56.3 NC_004681.1 + 62371 0.66 0.740921
Target:  5'- ---cUCCUCgGcgGUGAucuuGCCCCCGg -3'
miRNA:   3'- uacaAGGGGgUuaCGCUuu--CGGGGGC- -5'
18298 3' -56.3 NC_004681.1 + 44130 0.66 0.709641
Target:  5'- ----aCCCCCGAggccGCGGGccuGGCCCUCa -3'
miRNA:   3'- uacaaGGGGGUUa---CGCUU---UCGGGGGc -5'
18298 3' -56.3 NC_004681.1 + 31320 0.66 0.699053
Target:  5'- ---gUCCCCCAGccacgcUGCGAu-GUCCUCGa -3'
miRNA:   3'- uacaAGGGGGUU------ACGCUuuCGGGGGC- -5'
18298 3' -56.3 NC_004681.1 + 4054 0.67 0.677699
Target:  5'- -cGUUCCaucuCCCGGUGCuucaggccagcGAAGCCCUCGg -3'
miRNA:   3'- uaCAAGG----GGGUUACGc----------UUUCGGGGGC- -5'
18298 3' -56.3 NC_004681.1 + 54111 0.68 0.623761
Target:  5'- cGUGgaagCCagCAAUGCGAGA-CCCCCGg -3'
miRNA:   3'- -UACaa--GGggGUUACGCUUUcGGGGGC- -5'
18298 3' -56.3 NC_004681.1 + 7367 0.68 0.612957
Target:  5'- ---cUCCCgCCAAgcccGCGGccgagaagAAGCCCCCGc -3'
miRNA:   3'- uacaAGGG-GGUUa---CGCU--------UUCGGGGGC- -5'
18298 3' -56.3 NC_004681.1 + 535 0.68 0.612957
Target:  5'- uUGgaCgCCCA--GCGGAGGCCCUCGu -3'
miRNA:   3'- uACaaGgGGGUuaCGCUUUCGGGGGC- -5'
18298 3' -56.3 NC_004681.1 + 1246 0.69 0.507125
Target:  5'- ----cCCCaCCGAUGgGGAacucguGGCCCCCGa -3'
miRNA:   3'- uacaaGGG-GGUUACgCUU------UCGGGGGC- -5'
18298 3' -56.3 NC_004681.1 + 22361 0.72 0.391788
Target:  5'- ---aUCCCCCAcgGCGAGGaccUCCCCGa -3'
miRNA:   3'- uacaAGGGGGUuaCGCUUUc--GGGGGC- -5'
18298 3' -56.3 NC_004681.1 + 69933 0.73 0.309687
Target:  5'- uGUGUgUCUCCCGuUGCGAuAGCCCUCu -3'
miRNA:   3'- -UACA-AGGGGGUuACGCUuUCGGGGGc -5'
18298 3' -56.3 NC_004681.1 + 30445 1.07 0.001391
Target:  5'- aAUGUUCCCCCAAUGCGAAAGCCCCCGa -3'
miRNA:   3'- -UACAAGGGGGUUACGCUUUCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.