miRNA: 3'- gaGUCCCCGGa----AGAaGCUAUAa-GUCa -5'
miRNA: 3'- gAGU-CCCCGGAagaaGCUAUA---AGUCa -5'
miRNA: 3'- -GAGU--CCCCGGAAGAAGcuau-AAGUCa -5'
miRNA: 3'- -GAGUCCCCGGAagaAGcUAuaAGUCa -5'
miRNA: 3'- -GAGUCCCCGGAAGAAGCUAUAAGUCA- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18298 | 5' | -50.4 | NC_004681.1 | + | 44921 | 0.67 | 0.924284 |
|
Target: 5'- -aCGGGGGCCgcccgUCU-CGAUGUcgUAGg -3' miRNA: 3'- gaGUCCCCGGa----AGAaGCUAUAa-GUCa -5' |
|||||||
| 18298 | 5' | -50.4 | NC_004681.1 | + | 64790 | 0.69 | 0.883417 |
|
Target: 5'- gUCAuGGGGCCUg---CGAUGUaugUCAGg -3' miRNA: 3'- gAGU-CCCCGGAagaaGCUAUA---AGUCa -5' |
|||||||
| 18298 | 5' | -50.4 | NC_004681.1 | + | 34221 | 0.69 | 0.859313 |
|
Target: 5'- aCUCGgcGGGGCCUUCUUUugcguUUCGGg -3' miRNA: 3'- -GAGU--CCCCGGAAGAAGcuau-AAGUCa -5' |
|||||||
| 18298 | 5' | -50.4 | NC_004681.1 | + | 54839 | 0.7 | 0.823768 |
|
Target: 5'- cCUCGGGGGCCUgg-UC-AUcgUCGGa -3' miRNA: 3'- -GAGUCCCCGGAagaAGcUAuaAGUCa -5' |
|||||||
| 18298 | 5' | -50.4 | NC_004681.1 | + | 30411 | 1.08 | 0.004955 |
|
Target: 5'- aCUCAGGGGCCUUCUUCGAUAUUCAGUu -3' miRNA: 3'- -GAGUCCCCGGAAGAAGCUAUAAGUCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home