miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18299 3' -53.9 NC_004681.1 + 45019 0.67 0.809714
Target:  5'- aCCGc-GUGG-GGGCGAGCUcuuUGGCCu- -3'
miRNA:   3'- -GGCacUACCuUCCGCUCGA---ACUGGcg -5'
18299 3' -53.9 NC_004681.1 + 59007 0.68 0.800388
Target:  5'- cUCGUGggGGAGGGCGccc---ACCGCg -3'
miRNA:   3'- -GGCACuaCCUUCCGCucgaacUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 30333 0.68 0.771436
Target:  5'- gCCGcuGUGGcGGGCGAucuuguagacguGCUUG-CCGCa -3'
miRNA:   3'- -GGCacUACCuUCCGCU------------CGAACuGGCG- -5'
18299 3' -53.9 NC_004681.1 + 2029 0.68 0.761497
Target:  5'- -gGUGGucgUGGAGGGCG-GCcgcACCGCg -3'
miRNA:   3'- ggCACU---ACCUUCCGCuCGaacUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 37816 0.68 0.761497
Target:  5'- gCCcUGAUGGucGGUGAGgUUGAUCa- -3'
miRNA:   3'- -GGcACUACCuuCCGCUCgAACUGGcg -5'
18299 3' -53.9 NC_004681.1 + 18503 0.69 0.751431
Target:  5'- uCCG-GGUGcGAAGGCGuuuGCcgccgcGGCCGCc -3'
miRNA:   3'- -GGCaCUAC-CUUCCGCu--CGaa----CUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 37547 0.69 0.745335
Target:  5'- aUGUGGUGGAuguccuugaaguccgGGGuCGAGCUguggUGAUCGg -3'
miRNA:   3'- gGCACUACCU---------------UCC-GCUCGA----ACUGGCg -5'
18299 3' -53.9 NC_004681.1 + 30143 0.69 0.720578
Target:  5'- cCUGUGGgucGGGcucAGGCG-GCgcGGCCGCg -3'
miRNA:   3'- -GGCACUa--CCU---UCCGCuCGaaCUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 42488 0.69 0.710112
Target:  5'- cUCGUGuc-GAAGGCuucGAGCccGACCGCu -3'
miRNA:   3'- -GGCACuacCUUCCG---CUCGaaCUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 67192 0.7 0.68897
Target:  5'- aCCGaGAaGGAAGGCGAugagGCUgucgGcaACCGCa -3'
miRNA:   3'- -GGCaCUaCCUUCCGCU----CGAa---C--UGGCG- -5'
18299 3' -53.9 NC_004681.1 + 65108 0.71 0.60311
Target:  5'- --aUGAUGGAAGGCGcccugaAGUacGGCCGCc -3'
miRNA:   3'- ggcACUACCUUCCGC------UCGaaCUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 44765 0.71 0.60311
Target:  5'- gCCGUcGA-GGAGGGUGucCUUGGCCuGCa -3'
miRNA:   3'- -GGCA-CUaCCUUCCGCucGAACUGG-CG- -5'
18299 3' -53.9 NC_004681.1 + 33437 0.72 0.571054
Target:  5'- gCGUGAUGuGcGGGCGGGUgcccugGACgGCg -3'
miRNA:   3'- gGCACUAC-CuUCCGCUCGaa----CUGgCG- -5'
18299 3' -53.9 NC_004681.1 + 50372 0.72 0.539427
Target:  5'- aCGUGGUcGAGGGCG-GCU--ACCGCu -3'
miRNA:   3'- gGCACUAcCUUCCGCuCGAacUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 3236 0.73 0.518673
Target:  5'- gCCcUGGaGGAGGGCGAGCcgcUGGgCGCg -3'
miRNA:   3'- -GGcACUaCCUUCCGCUCGa--ACUgGCG- -5'
18299 3' -53.9 NC_004681.1 + 64214 0.73 0.498243
Target:  5'- uCCGc-AUGGucugGGGCGAGgaUGGCCGCu -3'
miRNA:   3'- -GGCacUACCu---UCCGCUCgaACUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 49421 0.73 0.488163
Target:  5'- gCCGUGgcGGAcGGUGAGgUUgugcaGACCGCc -3'
miRNA:   3'- -GGCACuaCCUuCCGCUCgAA-----CUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 5922 0.74 0.445981
Target:  5'- -gGUGGUGGAagaGGGCaugGAGCccauuccgcugcagUUGACCGCg -3'
miRNA:   3'- ggCACUACCU---UCCG---CUCG--------------AACUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 49804 0.75 0.381068
Target:  5'- gCgGUGGUGGAGGGUGAGggggagguagaGGCCGCa -3'
miRNA:   3'- -GgCACUACCUUCCGCUCgaa--------CUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 42416 0.76 0.342516
Target:  5'- gCGUGGgcgGGGAuGGUGAGCUUGACgaUGCu -3'
miRNA:   3'- gGCACUa--CCUU-CCGCUCGAACUG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.