miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18299 3' -53.9 NC_004681.1 + 857 0.66 0.891751
Target:  5'- cCCGUcAUGGgcGGCaGGGCcggguaGGCCGUc -3'
miRNA:   3'- -GGCAcUACCuuCCG-CUCGaa----CUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 2029 0.68 0.761497
Target:  5'- -gGUGGucgUGGAGGGCG-GCcgcACCGCg -3'
miRNA:   3'- ggCACU---ACCUUCCGCuCGaacUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 3236 0.73 0.518673
Target:  5'- gCCcUGGaGGAGGGCGAGCcgcUGGgCGCg -3'
miRNA:   3'- -GGcACUaCCUUCCGCUCGa--ACUgGCG- -5'
18299 3' -53.9 NC_004681.1 + 3313 0.66 0.884582
Target:  5'- aCGguaagGAcugcGGAccccgauuccGGGUGAGCUgGACCGCc -3'
miRNA:   3'- gGCa----CUa---CCU----------UCCGCUCGAaCUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 5922 0.74 0.445981
Target:  5'- -gGUGGUGGAagaGGGCaugGAGCccauuccgcugcagUUGACCGCg -3'
miRNA:   3'- ggCACUACCU---UCCG---CUCG--------------AACUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 8233 0.67 0.827825
Target:  5'- uCCuUGAUGGAcuuuGCGAGC-UGGCgGCc -3'
miRNA:   3'- -GGcACUACCUuc--CGCUCGaACUGgCG- -5'
18299 3' -53.9 NC_004681.1 + 10803 0.67 0.817957
Target:  5'- gUGUGAcacaccgUGGAAGaUGAGCUUGucucCCGCc -3'
miRNA:   3'- gGCACU-------ACCUUCcGCUCGAACu---GGCG- -5'
18299 3' -53.9 NC_004681.1 + 11294 0.66 0.877166
Target:  5'- gCCG-GGUGGGggacaGGGUGAGgUcuccGACUGCg -3'
miRNA:   3'- -GGCaCUACCU-----UCCGCUCgAa---CUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 12495 0.67 0.845148
Target:  5'- -gGUGAccgcGGAAGGCagcaacGGCgaGACCGCc -3'
miRNA:   3'- ggCACUa---CCUUCCGc-----UCGaaCUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 12679 0.67 0.836589
Target:  5'- gCCGUGcccgGGAAGGU--GUUUGACCcggGCa -3'
miRNA:   3'- -GGCACua--CCUUCCGcuCGAACUGG---CG- -5'
18299 3' -53.9 NC_004681.1 + 13358 0.67 0.818863
Target:  5'- cCUG-GAcgcGGAAuucGGCGAGCUUGAC-GCg -3'
miRNA:   3'- -GGCaCUa--CCUU---CCGCUCGAACUGgCG- -5'
18299 3' -53.9 NC_004681.1 + 14651 0.67 0.818863
Target:  5'- gCCGUGGUGGcgguGGCG-GCgauGCCGa -3'
miRNA:   3'- -GGCACUACCuu--CCGCuCGaacUGGCg -5'
18299 3' -53.9 NC_004681.1 + 18413 0.67 0.809714
Target:  5'- aCCGgacGAaccGGAAGGCu-GC-UGACCGCc -3'
miRNA:   3'- -GGCa--CUa--CCUUCCGcuCGaACUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 18503 0.69 0.751431
Target:  5'- uCCG-GGUGcGAAGGCGuuuGCcgccgcGGCCGCc -3'
miRNA:   3'- -GGCaCUAC-CUUCCGCu--CGaa----CUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 19613 0.66 0.861615
Target:  5'- aCGUuGUcGGAGGaGGGCUUGuCCGCg -3'
miRNA:   3'- gGCAcUAcCUUCCgCUCGAACuGGCG- -5'
18299 3' -53.9 NC_004681.1 + 22704 0.66 0.877166
Target:  5'- uCCGUGGagaaGGAGGUGGGCacguacaGGCCGUu -3'
miRNA:   3'- -GGCACUac--CUUCCGCUCGaa-----CUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 24535 0.67 0.836589
Target:  5'- gCCGgucaacGAUGuuGGGCGAGUggugGACCaGCu -3'
miRNA:   3'- -GGCa-----CUACcuUCCGCUCGaa--CUGG-CG- -5'
18299 3' -53.9 NC_004681.1 + 29959 0.67 0.836589
Target:  5'- uCUGUGAc------CGAGCUUGACCGCa -3'
miRNA:   3'- -GGCACUaccuuccGCUCGAACUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 30143 0.69 0.720578
Target:  5'- cCUGUGGgucGGGcucAGGCG-GCgcGGCCGCg -3'
miRNA:   3'- -GGCACUa--CCU---UCCGCuCGaaCUGGCG- -5'
18299 3' -53.9 NC_004681.1 + 30333 0.68 0.771436
Target:  5'- gCCGcuGUGGcGGGCGAucuuguagacguGCUUG-CCGCa -3'
miRNA:   3'- -GGCacUACCuUCCGCU------------CGAACuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.