Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18299 | 3' | -53.9 | NC_004681.1 | + | 5922 | 0.74 | 0.445981 |
Target: 5'- -gGUGGUGGAagaGGGCaugGAGCccauuccgcugcagUUGACCGCg -3' miRNA: 3'- ggCACUACCU---UCCG---CUCG--------------AACUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 3313 | 0.66 | 0.884582 |
Target: 5'- aCGguaagGAcugcGGAccccgauuccGGGUGAGCUgGACCGCc -3' miRNA: 3'- gGCa----CUa---CCU----------UCCGCUCGAaCUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 11294 | 0.66 | 0.877166 |
Target: 5'- gCCG-GGUGGGggacaGGGUGAGgUcuccGACUGCg -3' miRNA: 3'- -GGCaCUACCU-----UCCGCUCgAa---CUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 12495 | 0.67 | 0.845148 |
Target: 5'- -gGUGAccgcGGAAGGCagcaacGGCgaGACCGCc -3' miRNA: 3'- ggCACUa---CCUUCCGc-----UCGaaCUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 59007 | 0.68 | 0.800388 |
Target: 5'- cUCGUGggGGAGGGCGccc---ACCGCg -3' miRNA: 3'- -GGCACuaCCUUCCGCucgaacUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 37816 | 0.68 | 0.761497 |
Target: 5'- gCCcUGAUGGucGGUGAGgUUGAUCa- -3' miRNA: 3'- -GGcACUACCuuCCGCUCgAACUGGcg -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 2029 | 0.68 | 0.761497 |
Target: 5'- -gGUGGucgUGGAGGGCG-GCcgcACCGCg -3' miRNA: 3'- ggCACU---ACCUUCCGCuCGaacUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 37547 | 0.69 | 0.745335 |
Target: 5'- aUGUGGUGGAuguccuugaaguccgGGGuCGAGCUguggUGAUCGg -3' miRNA: 3'- gGCACUACCU---------------UCC-GCUCGA----ACUGGCg -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 30143 | 0.69 | 0.720578 |
Target: 5'- cCUGUGGgucGGGcucAGGCG-GCgcGGCCGCg -3' miRNA: 3'- -GGCACUa--CCU---UCCGCuCGaaCUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 42488 | 0.69 | 0.710112 |
Target: 5'- cUCGUGuc-GAAGGCuucGAGCccGACCGCu -3' miRNA: 3'- -GGCACuacCUUCCG---CUCGaaCUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 67192 | 0.7 | 0.68897 |
Target: 5'- aCCGaGAaGGAAGGCGAugagGCUgucgGcaACCGCa -3' miRNA: 3'- -GGCaCUaCCUUCCGCU----CGAa---C--UGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 65108 | 0.71 | 0.60311 |
Target: 5'- --aUGAUGGAAGGCGcccugaAGUacGGCCGCc -3' miRNA: 3'- ggcACUACCUUCCGC------UCGaaCUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 50372 | 0.72 | 0.539427 |
Target: 5'- aCGUGGUcGAGGGCG-GCU--ACCGCu -3' miRNA: 3'- gGCACUAcCUUCCGCuCGAacUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 64214 | 0.73 | 0.498243 |
Target: 5'- uCCGc-AUGGucugGGGCGAGgaUGGCCGCu -3' miRNA: 3'- -GGCacUACCu---UCCGCUCgaACUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 33437 | 0.72 | 0.571054 |
Target: 5'- gCGUGAUGuGcGGGCGGGUgcccugGACgGCg -3' miRNA: 3'- gGCACUAC-CuUCCGCUCGaa----CUGgCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 3236 | 0.73 | 0.518673 |
Target: 5'- gCCcUGGaGGAGGGCGAGCcgcUGGgCGCg -3' miRNA: 3'- -GGcACUaCCUUCCGCUCGa--ACUgGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 49421 | 0.73 | 0.488163 |
Target: 5'- gCCGUGgcGGAcGGUGAGgUUgugcaGACCGCc -3' miRNA: 3'- -GGCACuaCCUuCCGCUCgAA-----CUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 49804 | 0.75 | 0.381068 |
Target: 5'- gCgGUGGUGGAGGGUGAGggggagguagaGGCCGCa -3' miRNA: 3'- -GgCACUACCUUCCGCUCgaa--------CUGGCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 42416 | 0.76 | 0.342516 |
Target: 5'- gCGUGGgcgGGGAuGGUGAGCUUGACgaUGCu -3' miRNA: 3'- gGCACUa--CCUU-CCGCUCGAACUG--GCG- -5' |
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18299 | 3' | -53.9 | NC_004681.1 | + | 857 | 0.66 | 0.891751 |
Target: 5'- cCCGUcAUGGgcGGCaGGGCcggguaGGCCGUc -3' miRNA: 3'- -GGCAcUACCuuCCG-CUCGaa----CUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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