miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1830 5' -56.4 NC_001347.2 + 124050 0.66 0.947015
Target:  5'- aGGCGgcgGCggUGGCGUugGCagcaauAGCAGCCGa -3'
miRNA:   3'- aCUGCauaUG--ACCGCG--CG------UCGUCGGC- -5'
1830 5' -56.4 NC_001347.2 + 32744 0.66 0.947015
Target:  5'- gGACcgcaGCgUGGCcgGCGUGGCGGCCGa -3'
miRNA:   3'- aCUGcauaUG-ACCG--CGCGUCGUCGGC- -5'
1830 5' -56.4 NC_001347.2 + 227976 0.66 0.942672
Target:  5'- -cACGUGUacccGCUGGCgGCGgAGCuGUCGc -3'
miRNA:   3'- acUGCAUA----UGACCG-CGCgUCGuCGGC- -5'
1830 5' -56.4 NC_001347.2 + 124850 0.66 0.942672
Target:  5'- cUGACGUugAUGC-GGCGCGUagaaGGCAaCCa -3'
miRNA:   3'- -ACUGCA--UAUGaCCGCGCG----UCGUcGGc -5'
1830 5' -56.4 NC_001347.2 + 50010 0.66 0.942672
Target:  5'- -aGCGgugGCUGGagaaGCGCAGC-GUCGg -3'
miRNA:   3'- acUGCauaUGACCg---CGCGUCGuCGGC- -5'
1830 5' -56.4 NC_001347.2 + 94139 0.66 0.942672
Target:  5'- aGGCGggaGCgGGCGCagcgugcggaccGCAGCAcgGCCGg -3'
miRNA:   3'- aCUGCauaUGaCCGCG------------CGUCGU--CGGC- -5'
1830 5' -56.4 NC_001347.2 + 86637 0.66 0.942225
Target:  5'- -uACGUGUACgggauccUGGCGC-CGGaGGCCGg -3'
miRNA:   3'- acUGCAUAUG-------ACCGCGcGUCgUCGGC- -5'
1830 5' -56.4 NC_001347.2 + 219483 0.66 0.93857
Target:  5'- uUGuACGUGUACgccaucagcgcgaugGGCGCcaGGUAGCCGc -3'
miRNA:   3'- -AC-UGCAUAUGa--------------CCGCGcgUCGUCGGC- -5'
1830 5' -56.4 NC_001347.2 + 213783 0.66 0.938103
Target:  5'- uUGACGgacUGCUGGCccuucgagguaGCGCcAGCcgcccgcuuGGCCGa -3'
miRNA:   3'- -ACUGCau-AUGACCG-----------CGCG-UCG---------UCGGC- -5'
1830 5' -56.4 NC_001347.2 + 208577 0.66 0.938103
Target:  5'- -uGCG-AUcCUGGCGCGUcucuccGGCGGCUGu -3'
miRNA:   3'- acUGCaUAuGACCGCGCG------UCGUCGGC- -5'
1830 5' -56.4 NC_001347.2 + 58842 0.66 0.938103
Target:  5'- aGAUGU-UGCUGuGCGCGCucaagGGCCGu -3'
miRNA:   3'- aCUGCAuAUGAC-CGCGCGucg--UCGGC- -5'
1830 5' -56.4 NC_001347.2 + 39027 0.66 0.938103
Target:  5'- cGGCGUaAUGCgggcaGGCGUGCGGCAcGaaGg -3'
miRNA:   3'- aCUGCA-UAUGa----CCGCGCGUCGU-CggC- -5'
1830 5' -56.4 NC_001347.2 + 135486 0.66 0.937634
Target:  5'- cGGCGUAacGCcGGCGUGCgucaugaGGUAGCUGu -3'
miRNA:   3'- aCUGCAUa-UGaCCGCGCG-------UCGUCGGC- -5'
1830 5' -56.4 NC_001347.2 + 81684 0.66 0.937634
Target:  5'- cGGCGUG-ACcGGCgGUGCGGUcgcggguGGCCGg -3'
miRNA:   3'- aCUGCAUaUGaCCG-CGCGUCG-------UCGGC- -5'
1830 5' -56.4 NC_001347.2 + 221665 0.66 0.933308
Target:  5'- cUGGCGUucccguaGCgGGUGCGCAGCcaacGUCGa -3'
miRNA:   3'- -ACUGCAua-----UGaCCGCGCGUCGu---CGGC- -5'
1830 5' -56.4 NC_001347.2 + 193227 0.66 0.933308
Target:  5'- -cGCGgagGUGCUGGCG-GCcGUGGCCu -3'
miRNA:   3'- acUGCa--UAUGACCGCgCGuCGUCGGc -5'
1830 5' -56.4 NC_001347.2 + 42933 0.66 0.933308
Target:  5'- -uGCGUGgcCgUGGCGCGUcGCGGCUa -3'
miRNA:   3'- acUGCAUauG-ACCGCGCGuCGUCGGc -5'
1830 5' -56.4 NC_001347.2 + 82398 0.66 0.933308
Target:  5'- uUGGCGUAgccauugggGCcgugGGUgGCGCGGUGGCCu -3'
miRNA:   3'- -ACUGCAUa--------UGa---CCG-CGCGUCGUCGGc -5'
1830 5' -56.4 NC_001347.2 + 124347 0.66 0.932816
Target:  5'- cUGAUGcg-GCUGGaccgcgaGCGCAGCgucggcgAGCCGc -3'
miRNA:   3'- -ACUGCauaUGACCg------CGCGUCG-------UCGGC- -5'
1830 5' -56.4 NC_001347.2 + 164449 0.66 0.928285
Target:  5'- gGACccGUACUgcgacGGCaGCGcCAGCGGCUGg -3'
miRNA:   3'- aCUGcaUAUGA-----CCG-CGC-GUCGUCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.