miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18300 3' -59.1 NC_004681.1 + 40087 0.66 0.619079
Target:  5'- gCGCUGGUUcaaGGcCGAGCCGGUGaguugacccGGCGc -3'
miRNA:   3'- -GCGGCUAG---UC-GCUCGGCUACga-------CCGC- -5'
18300 3' -59.1 NC_004681.1 + 37474 0.66 0.608596
Target:  5'- uGCCGcAUUGGC-AGCCGGgauUGCaUGGUGg -3'
miRNA:   3'- gCGGC-UAGUCGcUCGGCU---ACG-ACCGC- -5'
18300 3' -59.1 NC_004681.1 + 45192 0.66 0.608596
Target:  5'- -cCCGGUCuugAGCGAGaCCGcgGCgagGGCc -3'
miRNA:   3'- gcGGCUAG---UCGCUC-GGCuaCGa--CCGc -5'
18300 3' -59.1 NC_004681.1 + 40665 0.66 0.59813
Target:  5'- uCGCCGuuugccUCGGCGAcGCuCGGUGagUGGCu -3'
miRNA:   3'- -GCGGCu-----AGUCGCU-CG-GCUACg-ACCGc -5'
18300 3' -59.1 NC_004681.1 + 16311 0.66 0.59813
Target:  5'- cCGCCGAa-GGCGuGGCCGuucUGCUuGGCc -3'
miRNA:   3'- -GCGGCUagUCGC-UCGGCu--ACGA-CCGc -5'
18300 3' -59.1 NC_004681.1 + 14318 0.66 0.59813
Target:  5'- uCGCCGAggcGCGGGCCaauGA-GCUGcGCGc -3'
miRNA:   3'- -GCGGCUaguCGCUCGG---CUaCGAC-CGC- -5'
18300 3' -59.1 NC_004681.1 + 39492 0.66 0.594995
Target:  5'- gGCCGGUggCAGCGAGgCGggacucauggcccaAgcggGCUGGCa -3'
miRNA:   3'- gCGGCUA--GUCGCUCgGC--------------Ua---CGACCGc -5'
18300 3' -59.1 NC_004681.1 + 19780 0.66 0.584566
Target:  5'- aCGCUGGUguGCGgcuccgcuaagaacGGCCGccaguaccgcGUGCUGcGCGg -3'
miRNA:   3'- -GCGGCUAguCGC--------------UCGGC----------UACGAC-CGC- -5'
18300 3' -59.1 NC_004681.1 + 14687 0.66 0.577286
Target:  5'- uCGCCagcCAGCuuGCCGGUGCcgaaGGCGa -3'
miRNA:   3'- -GCGGcuaGUCGcuCGGCUACGa---CCGC- -5'
18300 3' -59.1 NC_004681.1 + 69247 0.66 0.577286
Target:  5'- uGCCGGU-GGUGuAGCCGAgccgGUaGGCGa -3'
miRNA:   3'- gCGGCUAgUCGC-UCGGCUa---CGaCCGC- -5'
18300 3' -59.1 NC_004681.1 + 729 0.66 0.577286
Target:  5'- gCGUCGAUCAcCGGGCCGAa---GGCGc -3'
miRNA:   3'- -GCGGCUAGUcGCUCGGCUacgaCCGC- -5'
18300 3' -59.1 NC_004681.1 + 69618 0.67 0.566922
Target:  5'- cCGCCGcagCAGUGAGCacacgGCgUGGCGc -3'
miRNA:   3'- -GCGGCua-GUCGCUCGgcua-CG-ACCGC- -5'
18300 3' -59.1 NC_004681.1 + 12208 0.67 0.566922
Target:  5'- uGCCGAccuuggUCAGCGAGaCGc-GCgGGCGg -3'
miRNA:   3'- gCGGCU------AGUCGCUCgGCuaCGaCCGC- -5'
18300 3' -59.1 NC_004681.1 + 464 0.67 0.564855
Target:  5'- gGCCGAguucguggggaGGCGccuGGCCGAgaUGCUGGgCGu -3'
miRNA:   3'- gCGGCUag---------UCGC---UCGGCU--ACGACC-GC- -5'
18300 3' -59.1 NC_004681.1 + 40476 0.67 0.556606
Target:  5'- aCGCUGG-CGGU--GCCGcucuUGCUGGCGg -3'
miRNA:   3'- -GCGGCUaGUCGcuCGGCu---ACGACCGC- -5'
18300 3' -59.1 NC_004681.1 + 14462 0.67 0.556606
Target:  5'- gCGgCGAUCAuGCGGGCggagguggccuCGAUGUucuUGGCGc -3'
miRNA:   3'- -GCgGCUAGU-CGCUCG-----------GCUACG---ACCGC- -5'
18300 3' -59.1 NC_004681.1 + 13051 0.67 0.546346
Target:  5'- gCGCCGGUCAGCGugacguuGCCGcucagGGCc -3'
miRNA:   3'- -GCGGCUAGUCGCu------CGGCuacgaCCGc -5'
18300 3' -59.1 NC_004681.1 + 20268 0.68 0.486265
Target:  5'- aGUCGAUCaccgAGCGcAGCCGggGCagcgUGGUGa -3'
miRNA:   3'- gCGGCUAG----UCGC-UCGGCuaCG----ACCGC- -5'
18300 3' -59.1 NC_004681.1 + 17936 0.68 0.476549
Target:  5'- gCGCCcgGGUUGGUGAgGCCGGUGCcuUGcGCGg -3'
miRNA:   3'- -GCGG--CUAGUCGCU-CGGCUACG--AC-CGC- -5'
18300 3' -59.1 NC_004681.1 + 60121 0.68 0.476549
Target:  5'- cCGCCGAa-GGCGAGCaGGUGCccaccgGGCu -3'
miRNA:   3'- -GCGGCUagUCGCUCGgCUACGa-----CCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.