miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18300 3' -59.1 NC_004681.1 + 32095 1.09 0.000668
Target:  5'- gCGCCGAUCAGCGAGCCGAUGCUGGCGa -3'
miRNA:   3'- -GCGGCUAGUCGCUCGGCUACGACCGC- -5'
18300 3' -59.1 NC_004681.1 + 14483 0.81 0.075164
Target:  5'- cCGCCGAgcagGGCGcgcugguGGCCGGUGCUGGCGc -3'
miRNA:   3'- -GCGGCUag--UCGC-------UCGGCUACGACCGC- -5'
18300 3' -59.1 NC_004681.1 + 23637 0.76 0.15014
Target:  5'- uCGCCGAcgaCGGCGAGCCGGgugagcccaucgaGCUGGCc -3'
miRNA:   3'- -GCGGCUa--GUCGCUCGGCUa------------CGACCGc -5'
18300 3' -59.1 NC_004681.1 + 9072 0.74 0.206849
Target:  5'- gCGCCGA-CAGCGAggagGCCGA-GgaGGCGg -3'
miRNA:   3'- -GCGGCUaGUCGCU----CGGCUaCgaCCGC- -5'
18300 3' -59.1 NC_004681.1 + 60001 0.72 0.271147
Target:  5'- gGCgGGUCGGUgacgaugGAGUCGAcGCUGGCGu -3'
miRNA:   3'- gCGgCUAGUCG-------CUCGGCUaCGACCGC- -5'
18300 3' -59.1 NC_004681.1 + 13002 0.72 0.285244
Target:  5'- gGCUGGUCGGCacgaAGCCGGUGUgGGUGu -3'
miRNA:   3'- gCGGCUAGUCGc---UCGGCUACGaCCGC- -5'
18300 3' -59.1 NC_004681.1 + 18193 0.72 0.299202
Target:  5'- gCGCCGAUgcCGGgGAuGCCGAUGCccauacccgcgGGCGg -3'
miRNA:   3'- -GCGGCUA--GUCgCU-CGGCUACGa----------CCGC- -5'
18300 3' -59.1 NC_004681.1 + 51602 0.72 0.299202
Target:  5'- gGUgGcGUCGGUGuAGCCGA-GCUGGCGg -3'
miRNA:   3'- gCGgC-UAGUCGC-UCGGCUaCGACCGC- -5'
18300 3' -59.1 NC_004681.1 + 32007 0.72 0.299202
Target:  5'- uCGCUGAUCGGCGccGCgGGUGUcGGCa -3'
miRNA:   3'- -GCGGCUAGUCGCu-CGgCUACGaCCGc -5'
18300 3' -59.1 NC_004681.1 + 57385 0.71 0.312946
Target:  5'- gGUCGAgcgcaggaacaucUCAGCGcGCuccgCGAUGCUGGCGu -3'
miRNA:   3'- gCGGCU-------------AGUCGCuCG----GCUACGACCGC- -5'
18300 3' -59.1 NC_004681.1 + 43765 0.71 0.321119
Target:  5'- gGuuGAUCGGCGGGCUGAag--GGCGa -3'
miRNA:   3'- gCggCUAGUCGCUCGGCUacgaCCGC- -5'
18300 3' -59.1 NC_004681.1 + 61857 0.71 0.328687
Target:  5'- gGCCGAU-GGCG-GCCGcgGuCUGGUGg -3'
miRNA:   3'- gCGGCUAgUCGCuCGGCuaC-GACCGC- -5'
18300 3' -59.1 NC_004681.1 + 12406 0.71 0.336386
Target:  5'- aCGCUcGUCGGUGAGCCGGUGaCggacgaggacGGCGa -3'
miRNA:   3'- -GCGGcUAGUCGCUCGGCUAC-Ga---------CCGC- -5'
18300 3' -59.1 NC_004681.1 + 15313 0.7 0.37683
Target:  5'- aCGCC---CAGCGGGCCGAcGUUGGgGu -3'
miRNA:   3'- -GCGGcuaGUCGCUCGGCUaCGACCgC- -5'
18300 3' -59.1 NC_004681.1 + 9507 0.7 0.37683
Target:  5'- gCGCCGAagAGCGccucGGCC--UGCUGGUGu -3'
miRNA:   3'- -GCGGCUagUCGC----UCGGcuACGACCGC- -5'
18300 3' -59.1 NC_004681.1 + 45373 0.7 0.3939
Target:  5'- uCGCCGGUCacgGGCGGGgcguCCGGUGCUGcCa -3'
miRNA:   3'- -GCGGCUAG---UCGCUC----GGCUACGACcGc -5'
18300 3' -59.1 NC_004681.1 + 33452 0.69 0.402621
Target:  5'- gGCCGGucUCAGCcAGCgUGAUGUgcgGGCGg -3'
miRNA:   3'- gCGGCU--AGUCGcUCG-GCUACGa--CCGC- -5'
18300 3' -59.1 NC_004681.1 + 33524 0.69 0.411463
Target:  5'- uCGCCGGUCAugaggccCGAGCCaAUGUcuUGGCGc -3'
miRNA:   3'- -GCGGCUAGUc------GCUCGGcUACG--ACCGC- -5'
18300 3' -59.1 NC_004681.1 + 50947 0.69 0.435926
Target:  5'- gCGgCGAggcgcuucaccucuUCGGCGAGCUGGgugGCggugGGCGg -3'
miRNA:   3'- -GCgGCU--------------AGUCGCUCGGCUa--CGa---CCGC- -5'
18300 3' -59.1 NC_004681.1 + 13353 0.68 0.46693
Target:  5'- aCGCgGAauUCGGCGAGCuUGAcGC-GGCGg -3'
miRNA:   3'- -GCGgCU--AGUCGCUCG-GCUaCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.